From 5e67ae8442187cc23f0981e924f2033620a2ce7f Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Mon, 1 Jun 2009 09:48:00 +0000
Subject: [PATCH] provide uniquename based on srcfeature name and base range
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10966 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../components/genebuilder/GeneUtils.java | 50 +++++++++++++++++++
1 file changed, 50 insertions(+)
diff --git a/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java b/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java
index 8c0e37fee..8dc6c79f1 100644
--- a/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java
+++ b/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java
@@ -831,6 +831,56 @@ public class GeneUtils
return id;
}
+ /**
+ * Prompt the user for an ID and provide a default automated ID
+ * based on the range.
+ * @param entry_group
+ * @param is_forward
+ * @param range
+ * @return
+ */
+ public static String promptForUniquename(final EntryGroup entry_group,
+ final boolean is_forward,
+ final Range range)
+ {
+ final Entry default_entry = entry_group.getDefaultEntry ();
+ String id = null;
+
+ if(default_entry.getEMBLEntry() instanceof
+ uk.ac.sanger.artemis.io.DatabaseDocumentEntry)
+ {
+
+ while(id == null ||
+ id.equals("") ||
+ id.equals("to_be_set"))
+ {
+ String msg = "Provide a unique ID ";
+
+ if(!is_forward)
+ msg = msg + "for reverse strand : ";
+ else
+ msg = msg + ": ";
+
+
+ id = JOptionPane.showInputDialog(null, msg,
+ default_entry.getName()+":"+
+ range.getStart()+".."+
+ range.getEnd());
+
+ if(!isUniqueID(entry_group, id))
+ {
+ JOptionPane.showMessageDialog(null,
+ "ID "+id+" not unique.\nEnter a unique ID.",
+ "ID Not Unique",
+ JOptionPane.WARNING_MESSAGE);
+ id = null;
+ }
+ }
+ }
+ return id;
+ }
+
+
/**
* Test to ensure ID (chado uniquename) is unique.
* @param entry_group
--
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