From 61423bc5e3c00cf34d8bf4a105ca366edde932f2 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Fri, 15 Jan 2010 15:51:41 +0000
Subject: [PATCH] fix search for X on reverse strand
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13019 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/sequence/AminoAcidSequence.java | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/uk/ac/sanger/artemis/sequence/AminoAcidSequence.java b/uk/ac/sanger/artemis/sequence/AminoAcidSequence.java
index 8d947f9af..4dfc91631 100644
--- a/uk/ac/sanger/artemis/sequence/AminoAcidSequence.java
+++ b/uk/ac/sanger/artemis/sequence/AminoAcidSequence.java
@@ -675,7 +675,7 @@ public class AminoAcidSequence
amino_acid_string.charAt(amino_acid_string.length() - offset - 1);
// X matches any AA
- if(amino_acid_char == 'x')
+ if(amino_acid_char == 'x' || amino_acid_char == 'X')
// X matches any AA
continue;
@@ -727,7 +727,7 @@ public class AminoAcidSequence
amino_acid_string.charAt(amino_acid_string.length() - offset - 1);
// X matches any AA
- if(amino_acid_char == 'x')
+ if(amino_acid_char == 'x' || amino_acid_char == 'X')
continue;
if(getCodonTranslation(base3, base2, base1) != amino_acid_char)
--
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