From 66e9f503dd4a8b4fd0e69dbf99059d0360dc51b1 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Thu, 14 Jan 2010 13:58:29 +0000
Subject: [PATCH] ability to read file of BAM filenames from the command line
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13003 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/components/alignment/BamView.java | 8 +++++++-
1 file changed, 7 insertions(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/components/alignment/BamView.java b/uk/ac/sanger/artemis/components/alignment/BamView.java
index a8dfef4d6..5bb1afdf0 100644
--- a/uk/ac/sanger/artemis/components/alignment/BamView.java
+++ b/uk/ac/sanger/artemis/components/alignment/BamView.java
@@ -2797,7 +2797,13 @@ public class BamView extends JPanel
if(args[i].equals("-a"))
{
while(i < args.length-1 && !args[++i].startsWith("-"))
- bam.add(args[i]);
+ {
+ String filename = args[i];
+ if(FileSelectionDialog.isListOfFiles(filename))
+ bam.addAll(FileSelectionDialog.getListOfFiles(filename));
+ else
+ bam.add(filename);
+ }
--i;
}
else if(args[i].equals("-r"))
--
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