From 67c34aa966ec303bee33bb8982e8f7a5ec3c161f Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Mon, 20 Jan 2014 10:07:54 +0000
Subject: [PATCH] add comment to protein when splitting gene models
---
uk/ac/sanger/artemis/components/EditMenu.java | 15 +++++++++++++--
1 file changed, 13 insertions(+), 2 deletions(-)
diff --git a/uk/ac/sanger/artemis/components/EditMenu.java b/uk/ac/sanger/artemis/components/EditMenu.java
index 10a8bf105..db109113a 100644
--- a/uk/ac/sanger/artemis/components/EditMenu.java
+++ b/uk/ac/sanger/artemis/components/EditMenu.java
@@ -1772,8 +1772,19 @@ public class EditMenu extends SelectionMenu
final Qualifier comment =
new Qualifier("comment", "this gene model has previous ID "+prevId+
" and was reassigned a new ID as changes in the gene model occurred");
- ((Feature)gene1.getGene().getUserData()).addQualifierValues(comment);
- ((Feature)gene2.getGene().getUserData()).addQualifierValues(comment);
+
+ try
+ {
+ ((Feature)gene1.getProteinOfTranscript( GeneUtils.getUniqueName(
+ gene1.getTranscripts().get(0)) ).getUserData()).addQualifierValues(comment);
+ ((Feature)gene2.getProteinOfTranscript( GeneUtils.getUniqueName(
+ gene2.getTranscripts().get(0)) ).getUserData()).addQualifierValues(comment);
+ }
+ catch (Exception e)
+ {
+ ((Feature)gene1.getGene().getUserData()).addQualifierValues(comment);
+ ((Feature)gene2.getGene().getUserData()).addQualifierValues(comment);
+ }
}
}
--
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