From 68cb311d283d95334239d1530a3c41083910383c Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Mon, 17 Feb 2014 11:26:19 +0000
Subject: [PATCH] fix for getSegmentID()
---
uk/ac/sanger/artemis/io/GFFStreamFeature.java | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/io/GFFStreamFeature.java b/uk/ac/sanger/artemis/io/GFFStreamFeature.java
index 268196414..f08858d7e 100644
--- a/uk/ac/sanger/artemis/io/GFFStreamFeature.java
+++ b/uk/ac/sanger/artemis/io/GFFStreamFeature.java
@@ -429,7 +429,9 @@ public class GFFStreamFeature extends SimpleDocumentFeature implements
* @return
*/
public String getSegmentID(final Range r) {
- if (id_range_store != null && !getKey().getKeyString().equals("gene")) {
+ if ( id_range_store != null &&
+ getKey().getKeyString().indexOf("gene") == -1 &&
+ getKey().getKeyString().indexOf("RNA") == -1 ) {
int offset = 0;
if (getGffSeqName() != null && contig_ranges != null
&& contig_ranges.containsKey(getGffSeqName())) {
--
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