From 6be7a53b8db3de6302498f9dc51dd91a1e373af0 Mon Sep 17 00:00:00 2001 From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04> Date: Fri, 24 Jul 2009 13:12:30 +0000 Subject: [PATCH] add gene_synonym and ncRNA_class git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11432 ee4ac58c-ac51-4696-9907-e4b3aa274f04 --- etc/feature_keys | 7 ++++--- etc/qualifier_types | 5 +++++ 2 files changed, 9 insertions(+), 3 deletions(-) diff --git a/etc/feature_keys b/etc/feature_keys index bb34a2966..02f8cc19b 100644 --- a/etc/feature_keys +++ b/etc/feature_keys @@ -31,7 +31,7 @@ conflict @citation allele db_xref evidence gene inference label locus_tag enhancer allele citation db_xref evidence gene inference label locus_tag map note partial standard_name usedin exon EC_number allele citation codon codon_start db_xref evidence function gene inference label locus_tag map note number partial product pseudo standard_name transl_except usedin gap @estimated_length -gene allele citation db_xref evidence function gene inference label locus_tag map note operon partial phenotype product pseudo standard_name usedin +gene allele citation db_xref evidence function gene inference label locus_tag map note operon partial phenotype product pseudo standard_name usedin gene_synonym iDNA allele citation db_xref evidence function gene inference label locus_tag map note number partial standard_name usedin intron allele citation cons_splice db_xref evidence function gene inference label locus_tag map note number partial standard_name usedin mRNA allele citation db_xref evidence exception function gene inference label locus_tag map note operon partial product pseudo standard_name transcript_id usedin @@ -44,6 +44,7 @@ misc_recomb allele citation db_xref evidence gene inference label locus_tag misc_signal allele citation db_xref evidence function gene inference label locus_tag map note operon partial phenotype standard_name usedin misc_structure allele citation db_xref evidence function gene inference label locus_tag map note partial standard_name usedin modified_base @mod_base allele citation db_xref evidence frequency gene inference label locus_tag map note usedin +ncRNA allele citation db_xref evidence function gene inference label locus_tag map note partial product pseudo standard_name usedin ncRNA_class old_sequence @citation allele db_xref evidence gene inference label locus_tag map note partial replace usedin operon @operon allele citation db_xref evidence function inference label map note phenotype pseudo standard_name usedin oriT allele bound_moiety citation db_xref direction evidence gene inference label locus_tag map note rpt_family rpt_type rpt_unit standard_name usedin @@ -54,7 +55,7 @@ prim_transcript allele citation db_xref evidence function gene inference label l primer_bind PCR_conditions allele citation db_xref evidence gene inference label locus_tag map note partial standard_name usedin promoter allele citation db_xref evidence function gene inference label locus_tag map note operon partial phenotype pseudo standard_name usedin protein_bind @bound_moiety allele citation db_xref evidence function gene inference label locus_tag map note partial standard_name usedin -rRNA allele citation db_xref evidence function gene inference label locus_tag map note partial product pseudo standard_name usedin +rRNA allele citation db_xref evidence function gene inference label locus_tag map note partial product pseudo standard_name usedin ncRNA_class rep_origin allele citation db_xref direction evidence gene inference label locus_tag map note partial standard_name usedin repeat_region allele citation db_xref evidence function gene inference insertion_seq label locus_tag map note partial rpt_family rpt_type rpt_unit standard_name transposon usedin repeat_unit allele citation db_xref evidence function gene inference label locus_tag map note partial rpt_family rpt_type rpt_unit usedin @@ -65,7 +66,7 @@ snRNA allele citation db_xref evidence function gene inference label l snoRNA allele citation db_xref evidence function gene inference label locus_tag map note partial product pseudo standard_name usedin source @organism cell_line cell_type chloroplast chromoplast chromosome citation clone clone_lib country cultivar cyanelle db_xref dev_stage ecotype environmental_sample evidence focus frequency germline haplotype inference insertion_seq isolate isolation_source kinetoplast lab_host label macronuclear map mitochondrion mol_type note organelle plasmid pop_variant proviral rearranged segment sequenced_mol serotype serovar sex specific_host specimen_voucher strain sub_clone sub_species sub_strain tissue_lib tissue_type transgenic transposon usedin variety virion stem_loop allele citation db_xref evidence function gene inference label locus_tag map note operon partial standard_name usedin -tRNA allele anticodon citation db_xref evidence function gene inference label locus_tag map note partial product pseudo standard_name usedin +tRNA allele anticodon citation db_xref evidence function gene inference label locus_tag map note partial product pseudo standard_name usedin ncRNA_class terminator allele citation db_xref evidence gene inference label locus_tag map note operon partial standard_name usedin transit_peptide allele citation codon codon_start db_xref evidence function gene inference label locus_tag map note partial product pseudo standard_name transl_except usedin unsure allele citation db_xref evidence gene inference label locus_tag map note replace usedin diff --git a/etc/qualifier_types b/etc/qualifier_types index 5708d3872..392c405b4 100644 --- a/etc/qualifier_types +++ b/etc/qualifier_types @@ -50,6 +50,7 @@ focus no none frequency yes real 0.0 1.0 function yes "text" gene no "text" +gene_synonym no "text" germline yes none haplotype no "text" inference no "text" @@ -65,6 +66,10 @@ map no "text" mod_base no modbase mol_type no "text" note no "text" +ncRNA_class no list antisense_RNA autocatalytically_spliced_intron \ + ribozyme hammerhead_ribozyme RNase_P_RNA RNase_MRP_RNA \ + telomerase_RNA guide_RNA rasiRNA scRNA siRNA \ + miRNA piRNA snoRNA snRNA SRP_RNA vault_RNA Y_RNA other number yes number 1 99999999 operon no "text" organell no "text" -- GitLab