From 6c43fe6ac2487fdeb974acd4527fa8f12969852a Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Mon, 23 Jan 2012 12:40:56 +0000
Subject: [PATCH] add option to apply all filters
---
uk/ac/sanger/artemis/components/ViewMenu.java | 50 +++++++++++++++++++
1 file changed, 50 insertions(+)
diff --git a/uk/ac/sanger/artemis/components/ViewMenu.java b/uk/ac/sanger/artemis/components/ViewMenu.java
index 6c28d0144..6482d7e75 100644
--- a/uk/ac/sanger/artemis/components/ViewMenu.java
+++ b/uk/ac/sanger/artemis/components/ViewMenu.java
@@ -405,6 +405,54 @@ public class ViewMenu extends SelectionMenu
base_plot_group);
}
});
+
+ final JMenuItem all_filters_item =
+ new JMenuItem("Apply All Filters Above ...");
+ all_filters_item.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent event)
+ {
+ if(!checkEntryGroupSize(MAX_FILTER_FEATURE_COUNT))
+ return;
+
+ showBadStartCodons(getParentFrame(), selection,
+ entry_group, goto_event_source,
+ base_plot_group);
+
+ showBadStopCodons(getParentFrame(), selection,
+ entry_group, goto_event_source,
+ base_plot_group);
+
+ showStopsInTranslation(getParentFrame(), selection,
+ entry_group, goto_event_source,
+ base_plot_group);
+
+ showNonEMBLKeys(getParentFrame(), selection,
+ entry_group, goto_event_source,
+ base_plot_group);
+
+ showDuplicatedFeatures(getParentFrame(), selection,
+ entry_group, goto_event_source,
+ base_plot_group);
+
+ showOverlappingCDSs(getParentFrame(), selection,
+ entry_group, goto_event_source,
+ base_plot_group);
+
+ showFeaturesWithSameStopCodons(getParentFrame(),
+ selection, entry_group,
+ goto_event_source,
+ base_plot_group);
+
+ showMissingQualifierFeatures(getParentFrame(), selection,
+ entry_group, goto_event_source,
+ base_plot_group);
+
+ showFilterByMultipleID(getParentFrame(), selection,
+ entry_group, goto_event_source,
+ base_plot_group);
+ }
+ });
final JMenuItem filter_by_key_item =
new JMenuItem("Filter By Key ...");
@@ -455,6 +503,8 @@ public class ViewMenu extends SelectionMenu
feature_filters_menu.add(missing_qualifier_features_item);
feature_filters_menu.add(filter_by_multiple_sys_id);
feature_filters_menu.addSeparator();
+ feature_filters_menu.add(all_filters_item);
+ feature_filters_menu.addSeparator();
feature_filters_menu.add(filter_by_key_item);
feature_filters_menu.add(filter_by_selection_item);
--
GitLab