diff --git a/Makefile b/Makefile
index 48ad775831af8e5666f68813c78753d72c3bfa85..beb77396c063c91798e06b7885784691721f715b 100644
--- a/Makefile
+++ b/Makefile
@@ -292,6 +292,8 @@ artemis.jar : $(CLASSES)
         echo "Main-Class: uk.ac.sanger.artemis.circular.DNADraw" > manifest-circular; \
         jar cmf manifest-circular DNAPlotter.jar images/PSUlogo.gif README etc \
                              uk org/gmod org/apache org/biojava/bio/ LICENSE.Apache j2ssh.properties; \
+	echo "Main-Class: uk.ac.sanger.artemis.components.alignment.BamView" > manifest-bamview; \
+	jar cmf manifest-bamview BamView.jar etc uk org net/sf com/ibatis; \
 	echo "Main-Class: uk.ac.sanger.artemis.components.ActMain" > manifest-act; \
 	jar cmf manifest-act act.jar images/PSUlogo.gif images/icon.gif images/helix.gif images/sanger-centre.gif README etc \
 	                     artemis_sqlmap org uk com net nsdb type seqdb LICENSE.Apache j2ssh.properties; \