From 6ce69cf43b9e877a1f29cfed1a886c13bf4ac147 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Mon, 25 Oct 2010 14:40:51 +0000
Subject: [PATCH] fix strand stack view using colour by coverage
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@14920 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/components/alignment/BamView.java | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/components/alignment/BamView.java b/uk/ac/sanger/artemis/components/alignment/BamView.java
index d1c964158..b8366f160 100644
--- a/uk/ac/sanger/artemis/components/alignment/BamView.java
+++ b/uk/ac/sanger/artemis/components/alignment/BamView.java
@@ -1258,7 +1258,8 @@ public class BamView extends JPanel
int recordStart = samRecord.getAlignmentStart()+offset;
int recordEnd = samRecord.getAlignmentEnd()+offset;
- if(lstStart != recordStart || lstEnd != recordEnd)
+ if(colourByCoverageColour.isSelected() ||
+ lstStart != recordStart || lstEnd != recordEnd)
{
if(colourByCoverageColour.isSelected())
g2.setColor(getColourByCoverageColour(samRecord));
--
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