From 6cf94ebaf95b9bcdf589a1e3fa91cf3845fee2d0 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Tue, 14 Jun 2005 08:18:41 +0000
Subject: [PATCH] remove CHADO specific -- using GFF
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2839 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/io/LineGroup.java | 16 ++--------------
1 file changed, 2 insertions(+), 14 deletions(-)
diff --git a/uk/ac/sanger/artemis/io/LineGroup.java b/uk/ac/sanger/artemis/io/LineGroup.java
index e81786ab9..d9c4bc134 100644
--- a/uk/ac/sanger/artemis/io/LineGroup.java
+++ b/uk/ac/sanger/artemis/io/LineGroup.java
@@ -20,7 +20,7 @@
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
*
- * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/io/LineGroup.java,v 1.4 2005-05-23 12:08:47 tjc Exp $
+ * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/io/LineGroup.java,v 1.5 2005-06-14 08:18:41 tjc Exp $
*/
package uk.ac.sanger.artemis.io;
@@ -37,7 +37,7 @@ import uk.ac.sanger.artemis.util.LinePushBackReader;
* that start with FT.
*
* @author Kim Rutherford
- * @version $Id: LineGroup.java,v 1.4 2005-05-23 12:08:47 tjc Exp $
+ * @version $Id: LineGroup.java,v 1.5 2005-06-14 08:18:41 tjc Exp $
*
*/
@@ -133,12 +133,6 @@ abstract class LineGroup
**/
final static int GAME_XML = 15;
- /**
- * The tag for Chado files.
- **/
- final static int CHADO_FEATURE = 16;
-
-
/**
* This hash table contains the GENBANK start of line keywords (LOCUS,
* DEFINITION, FEATURES etc.)
@@ -201,9 +195,6 @@ abstract class LineGroup
switch (line_type)
{
- case CHADO_FEATURE:
- return DatabaseStreamFeature.readFromStream (reader);
-
case SEQUENCE:
return StreamSequenceFactory.makeStreamSequence (reader);
@@ -255,9 +246,6 @@ abstract class LineGroup
*/
public static int getLineType(String line)
{
- if(line.startsWith("CHADO="))
- return CHADO_FEATURE;
-
if(line.startsWith ("<?xml"))
return GAME_XML;
--
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