From 7143089e28d5088e6a8d4f265a6e3d6a7c81efeb Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Wed, 18 Sep 2013 14:49:02 +0100
Subject: [PATCH] check for chado gene in mapGffToNativeFeature()
---
uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java b/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java
index 5a8ba07e5..11284b4b9 100644
--- a/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java
+++ b/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java
@@ -211,7 +211,8 @@ public class PublicDBDocumentEntry extends SimpleDocumentEntry
if(location == null)
return null;
// flatten gene model - combining qualifiers
- if(key.getKeyString().equals(DatabaseDocument.EXONMODEL))
+ if(key.getKeyString().equals(DatabaseDocument.EXONMODEL) &&
+ ((GFFStreamFeature)feature).getChadoGene() != null)
{
ChadoCanonicalGene chadoGene = ((GFFStreamFeature)feature).getChadoGene();
--
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