From 73ec4a49b5208f088318cfeef93b25ffa9bb4e41 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Mon, 21 Mar 2011 16:23:44 +0000
Subject: [PATCH] trim white space
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15774 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/components/alignment/BamView.java | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/components/alignment/BamView.java b/uk/ac/sanger/artemis/components/alignment/BamView.java
index 024494706..54acc6f57 100644
--- a/uk/ac/sanger/artemis/components/alignment/BamView.java
+++ b/uk/ac/sanger/artemis/components/alignment/BamView.java
@@ -585,7 +585,7 @@ public class BamView extends JPanel
offsetLengths = new Hashtable<String, Integer>(seqNames.size());
for(int i=0; i<seqNames.size(); i++)
{
- FeatureContigPredicate predicate = new FeatureContigPredicate(seqNames.get(i));
+ FeatureContigPredicate predicate = new FeatureContigPredicate(seqNames.get(i).trim());
for(int j=0; j<features.size(); j++)
{
if(predicate.testPredicate(features.elementAt(j)))
@@ -598,6 +598,7 @@ public class BamView extends JPanel
if(offsetLengths.size() != seqNames.size())
{
+ System.err.println("Found: "+offsetLengths.size() +" of "+ seqNames.size());
JOptionPane.showMessageDialog(this,
"There is a problem matching the reference sequences\n"+
"to the names in the BAM file. This may mean the labels\n"+
--
GitLab