diff --git a/uk/ac/sanger/artemis/plot/GCFrameAlgorithm.java b/uk/ac/sanger/artemis/plot/GCFrameAlgorithm.java index e31d720d87be2082275ece92c37e4109d9e7017a..ff965f5f8a4d668057842154ab7e58ef930c844e 100644 --- a/uk/ac/sanger/artemis/plot/GCFrameAlgorithm.java +++ b/uk/ac/sanger/artemis/plot/GCFrameAlgorithm.java @@ -20,7 +20,7 @@ * along with this program; if not, write to the Free Software * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. * - * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/plot/GCFrameAlgorithm.java,v 1.4 2006-06-20 13:40:42 tjc Exp $ + * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/plot/GCFrameAlgorithm.java,v 1.5 2006-06-21 10:06:08 tjc Exp $ */ package uk.ac.sanger.artemis.plot; @@ -38,7 +38,7 @@ import java.awt.*; * constructor. * * @author Kim Rutherford - * @version $Id: GCFrameAlgorithm.java,v 1.4 2006-06-20 13:40:42 tjc Exp $ + * @version $Id: GCFrameAlgorithm.java,v 1.5 2006-06-21 10:06:08 tjc Exp $ **/ public class GCFrameAlgorithm extends BaseAlgorithm { @@ -136,7 +136,9 @@ public class GCFrameAlgorithm extends BaseAlgorithm // multiply by 3 because we are taking every third base for(int frame = 0 ; frame < 3 ; ++frame) + { values[frame] = 1.0F * gc_counts[frame]/sub_sequence_length * 3 * 100; + } } /** @@ -173,10 +175,10 @@ public class GCFrameAlgorithm extends BaseAlgorithm g2d.setColor(frameColour[1]); g2d.drawLine(font_width*2, lineHgt, font_width*4, lineHgt); - g2d.setColor(frameColour[0]); + g2d.setColor(frameColour[2]); g2d.drawLine(font_width*7, lineHgt, font_width*9, lineHgt); - g2d.setColor(frameColour[2]); + g2d.setColor(frameColour[0]); g2d.drawLine(font_width*12, lineHgt, font_width*14, lineHgt); g2d.setStroke(stroke); return;