From 7708f2445beafc7ce7464eec9d35e3094039716c Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Wed, 21 Jun 2006 10:06:08 +0000
Subject: [PATCH] change legend
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4444 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/plot/GCFrameAlgorithm.java | 10 ++++++----
1 file changed, 6 insertions(+), 4 deletions(-)
diff --git a/uk/ac/sanger/artemis/plot/GCFrameAlgorithm.java b/uk/ac/sanger/artemis/plot/GCFrameAlgorithm.java
index e31d720d8..ff965f5f8 100644
--- a/uk/ac/sanger/artemis/plot/GCFrameAlgorithm.java
+++ b/uk/ac/sanger/artemis/plot/GCFrameAlgorithm.java
@@ -20,7 +20,7 @@
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
*
- * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/plot/GCFrameAlgorithm.java,v 1.4 2006-06-20 13:40:42 tjc Exp $
+ * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/plot/GCFrameAlgorithm.java,v 1.5 2006-06-21 10:06:08 tjc Exp $
*/
package uk.ac.sanger.artemis.plot;
@@ -38,7 +38,7 @@ import java.awt.*;
* constructor.
*
* @author Kim Rutherford
- * @version $Id: GCFrameAlgorithm.java,v 1.4 2006-06-20 13:40:42 tjc Exp $
+ * @version $Id: GCFrameAlgorithm.java,v 1.5 2006-06-21 10:06:08 tjc Exp $
**/
public class GCFrameAlgorithm extends BaseAlgorithm
{
@@ -136,7 +136,9 @@ public class GCFrameAlgorithm extends BaseAlgorithm
// multiply by 3 because we are taking every third base
for(int frame = 0 ; frame < 3 ; ++frame)
+ {
values[frame] = 1.0F * gc_counts[frame]/sub_sequence_length * 3 * 100;
+ }
}
/**
@@ -173,10 +175,10 @@ public class GCFrameAlgorithm extends BaseAlgorithm
g2d.setColor(frameColour[1]);
g2d.drawLine(font_width*2, lineHgt, font_width*4, lineHgt);
- g2d.setColor(frameColour[0]);
+ g2d.setColor(frameColour[2]);
g2d.drawLine(font_width*7, lineHgt, font_width*9, lineHgt);
- g2d.setColor(frameColour[2]);
+ g2d.setColor(frameColour[0]);
g2d.drawLine(font_width*12, lineHgt, font_width*14, lineHgt);
g2d.setStroke(stroke);
return;
--
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