From 772f8de264b0cf865fb946102dca277a6ec427b9 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Thu, 22 Aug 2013 11:00:04 +0100
Subject: [PATCH] remove commented out function
---
.../artemis/components/FeatureEdit.java | 128 ------------------
1 file changed, 128 deletions(-)
diff --git a/uk/ac/sanger/artemis/components/FeatureEdit.java b/uk/ac/sanger/artemis/components/FeatureEdit.java
index 92ffde39f..6b459dd73 100644
--- a/uk/ac/sanger/artemis/components/FeatureEdit.java
+++ b/uk/ac/sanger/artemis/components/FeatureEdit.java
@@ -1428,134 +1428,6 @@ public class FeatureEdit extends JPanel
}
}
-
- /**
- * Edit the qualifiers of this Feature in an external editor. The
- * qualifiers will be set when the editor finishes. This method works by
- * writing the qualifiers to a temporary file and the sequence of the
- * feature to a different file.
- * @param editor_extra_args Extra arguments to pass to the editor. null
- * means there are no extra args.
- **/
- /*private void externalEdit(final String[] editor_extra_args)
- {
- try
- {
- final String pre_edit_text = qualifier_text_area.getText();
-
- // write to a temporary file
- final Date current_time = calendar.getTime();
-
- final String temp_file_name =
- "/tmp/artemis_temp." + current_time.getTime();
-
- final File temp_file = new File(temp_file_name);
-
- final FileWriter out_writer = new FileWriter(temp_file);
- final PrintWriter print_writer = new PrintWriter(out_writer);
-
- print_writer.write(qualifier_text_area.getText());
- print_writer.close();
- out_writer.close();
-
- final File sequence_temp_file = new File(temp_file_name + ".seq");
- final FileWriter sequence_out_writer =
- new FileWriter(sequence_temp_file);
- final PrintWriter sequence_print_writer =
- new PrintWriter(sequence_out_writer);
-
- getFeature().writeBasesOfFeature(sequence_print_writer);
- sequence_print_writer.close();
- sequence_out_writer.close();
-
- final String editor_path =
- Options.getOptions().getProperty("external_editor");
-
- final String[] process_args;
-
- if(editor_extra_args == null)
- {
- process_args = new String[1];
- process_args[0] = temp_file.getCanonicalPath();
- }
- else
- {
- process_args = new String[editor_extra_args.length + 1];
- System.arraycopy(editor_extra_args, 0, process_args, 0,
- editor_extra_args.length);
- process_args[process_args.length - 1] = temp_file.getCanonicalPath();
- }
-
-
- System.out.println(editor_path);
- for(int i=0;i<process_args.length;i++)
- System.out.println(process_args[i]);
-
- final Process process =
- ExternalProgram.startProgram(editor_path, process_args);
-
- final ProcessWatcher process_watcher =
- new ProcessWatcher(process, "editor", false);
-
- final Thread watcher_thread = new Thread(process_watcher);
- watcher_thread.start();
-
- final ProcessWatcherListener listener = new ProcessWatcherListener()
- {
- public void processFinished(final ProcessWatcherEvent event)
- {
- try
- {
- final FileReader file_reader = new FileReader(temp_file);
- final BufferedReader buffered_reader =
- new BufferedReader(file_reader);
-
- final StringBuffer buffer = new StringBuffer();
- String line;
-
- while((line = buffered_reader.readLine()) != null)
- buffer.append(line + "\n");
-
- //ensure current qualifier text has not changed
- if(!qualifier_text_area.getText().equals(pre_edit_text))
- {
- final String message =
- "the qualifiers have changed - apply changes from the " +
- "external editor?";
-
- final YesNoDialog yes_no_dialog =
- new YesNoDialog(frame, message);
-
- if(!yes_no_dialog.getResult())
- return;
- }
-
- qualifier_text_area.setText(buffer.toString());
- temp_file.delete();
- sequence_temp_file.delete();
-
- return;
- }
- catch(IOException e)
- {
- new MessageDialog(frame, "an error occured while " +
- "reading from the editor: " + e);
- }
- }
- };
-
- process_watcher.addProcessWatcherListener(listener);
- }
- catch(IOException e)
- {
- new MessageDialog(frame, "error while starting editor: " + e);
- }
- catch(ExternalProgramException e)
- {
- new MessageDialog(frame, "error while starting editor: " + e);
- }
- }*/
-
/**
* Read the qualifiers from the feature and update the qualifier JTextArea.
**/
--
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