From 7929dd0e33985414a56ad5be552c21cf781d93b1 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Thu, 7 Feb 2013 12:14:38 +0000
Subject: [PATCH] fix for threshold cut-off
---
uk/ac/sanger/artemis/components/alignment/BamView.java | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/uk/ac/sanger/artemis/components/alignment/BamView.java b/uk/ac/sanger/artemis/components/alignment/BamView.java
index 612090ba0..2b1a64421 100644
--- a/uk/ac/sanger/artemis/components/alignment/BamView.java
+++ b/uk/ac/sanger/artemis/components/alignment/BamView.java
@@ -705,10 +705,9 @@ public class BamView extends JPanel
for(int i=abeg; i<aend; i++)
{
-
int bin = ((i-start)/binSize)-1;
if(bin < 0)
- bin = 0;
+ continue;
else if(bin > nbins-1)
bin = nbins-1;
cov[bin]++;
--
GitLab