From 79342b210c40cceff533b2eeb2c02b760e3ef1ba Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Wed, 10 Mar 2010 09:32:29 +0000
Subject: [PATCH] make stack view the default
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13453 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/components/alignment/BamView.java | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/uk/ac/sanger/artemis/components/alignment/BamView.java b/uk/ac/sanger/artemis/components/alignment/BamView.java
index a65f8e95a..40fec277e 100644
--- a/uk/ac/sanger/artemis/components/alignment/BamView.java
+++ b/uk/ac/sanger/artemis/components/alignment/BamView.java
@@ -145,7 +145,7 @@ public class BamView extends JPanel
private JComboBox combo;
private boolean isSingle = false;
private boolean isSNPs = false;
- private boolean isStackView = false;
+ private boolean isStackView = true;
private boolean isPairedStackView = false;
private boolean isStrandStackView = false;
private boolean isCoverage = false;
@@ -172,7 +172,7 @@ public class BamView extends JPanel
private JMenu bamFilesMenu = new JMenu("BAM files");
private JCheckBoxMenuItem logMenuItem = new JCheckBoxMenuItem("Use Log Scale", logScale);
- private JCheckBoxMenuItem checkBoxStackView = new JCheckBoxMenuItem("Stack View");
+ private JCheckBoxMenuItem checkBoxStackView = new JCheckBoxMenuItem("Stack View", isStackView);
private JCheckBoxMenuItem colourByCoverageColour = new JCheckBoxMenuItem("Coverage Plot Colours");
private JCheckBoxMenuItem baseQualityColour = new JCheckBoxMenuItem("Base Quality");
private JCheckBoxMenuItem markInsertions = new JCheckBoxMenuItem("Mark Insertions", true);
@@ -2017,7 +2017,7 @@ public class BamView extends JPanel
ButtonGroup group = new ButtonGroup();
final JCheckBoxMenuItem checkBoxPairedStackView = new JCheckBoxMenuItem("Paired Stack View");
final JCheckBoxMenuItem checkBoxStrandStackView = new JCheckBoxMenuItem("Strand Stack View");
- final JCheckBoxMenuItem checkIsizeStackView = new JCheckBoxMenuItem("Inferred Size View", true);
+ final JCheckBoxMenuItem checkIsizeStackView = new JCheckBoxMenuItem("Inferred Size View", false);
checkBoxStackView.setFont(checkIsizeStackView.getFont());
baseQualityColour.setFont(checkIsizeStackView.getFont());
colourByCoverageColour.setFont(checkIsizeStackView.getFont());
--
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