From 7ddd640ee41e90ac6344a5c2c54e7b47b0566e17 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Thu, 24 Feb 2011 10:20:06 +0000
Subject: [PATCH] change MULTI_ALLELE_PATTERN to look for lowercase bases
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15604 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/components/variant/VCFRecord.java | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/components/variant/VCFRecord.java b/uk/ac/sanger/artemis/components/variant/VCFRecord.java
index b8e6f77b6..6a55e784c 100644
--- a/uk/ac/sanger/artemis/components/variant/VCFRecord.java
+++ b/uk/ac/sanger/artemis/components/variant/VCFRecord.java
@@ -45,7 +45,7 @@ class VCFRecord
private String format;
private String data[][];
private short synFlag = -1;
- protected static Pattern MULTI_ALLELE_PATTERN = Pattern.compile("^[AGCT]+,[AGCT,]+$");
+ protected static Pattern MULTI_ALLELE_PATTERN = Pattern.compile("^[AGCTagct]+,[AGCTacgt,]+$");
protected static Pattern COLON_PATTERN = Pattern.compile(":");
protected static Pattern SEMICOLON_PATTERN = Pattern.compile(";");
--
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