From 7de9aa8cb4dec312c0b08beab56de164992951c8 Mon Sep 17 00:00:00 2001 From: tcarver <tjc> Date: Wed, 19 Mar 2014 10:22:09 +0000 Subject: [PATCH] update for start/end_range qualifiers for pseudogene transcript and exons --- etc/feature_keys_gff | 4 ++-- etc/versions | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/etc/feature_keys_gff b/etc/feature_keys_gff index a5bcc0d5e..afb9f5642 100644 --- a/etc/feature_keys_gff +++ b/etc/feature_keys_gff @@ -14,8 +14,8 @@ gene ID Name Alias Parent Note Target Gap Derives_from Dbxref Ont #CDS ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified codon_start description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score results note comment job polypeptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref product molecule_type size organism_name strain topology localization gff_source gff_seqname score mass isoelectric charge source private signal_peptide membrane_structure cytoplasmic_polypeptide_region non_cytoplasmic_polypeptide_region transmembrane_polypeptide_region cytoplasm_location transmembrane non_cytoplasm_location GPI_anchor_cleavage_site comment curation translation pseudogene ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score private -pseudogenic_exon ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score private -pseudogenic_transcript ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score product +pseudogenic_exon ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score private +pseudogenic_transcript ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score product intron ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score exon ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified codon_start description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score three_prime_UTR ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified systematic_id note comment private curation diff --git a/etc/versions b/etc/versions index b920a1143..31b100847 100644 --- a/etc/versions +++ b/etc/versions @@ -1,4 +1,4 @@ -Artemis Release 16.0.6 -ACT Release 13.0.6 +Artemis Release 16.0.7 +ACT Release 13.0.7 DNAPlotter Release 1.11 BamView 1.2.13 \ No newline at end of file -- GitLab