From 8285a7b09e7b1059f5af9ac3a7336ecfe5712397 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Mon, 7 Mar 2011 12:08:21 +0000
Subject: [PATCH] draw the read coverage and scale if needed
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15663 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../artemis/components/alignment/BamView.java | 28 +++++++++++++++----
1 file changed, 22 insertions(+), 6 deletions(-)
diff --git a/uk/ac/sanger/artemis/components/alignment/BamView.java b/uk/ac/sanger/artemis/components/alignment/BamView.java
index 824dec3e5..d53c57027 100644
--- a/uk/ac/sanger/artemis/components/alignment/BamView.java
+++ b/uk/ac/sanger/artemis/components/alignment/BamView.java
@@ -714,12 +714,7 @@ public class BamView extends JPanel
else
{
if(isCoverageView(pixPerBase))
- {
- int hgt = jspView.getVisibleRect().height;
- g2.translate(0, getHeight()-hgt);
- coverageView.draw(g2, getWidth(), hgt);
- coverageView.drawMax(g2);
- }
+ drawCoverage(g2,start, end, pixPerBase);
else if(isStackView())
drawStackView(g2, seqLength, pixPerBase, start, end);
else if(isPairedStackView())
@@ -1474,6 +1469,27 @@ public class BamView extends JPanel
}
}
+ /**
+ * Draw the read coverage.
+ * @param g2
+ * @param start
+ * @param end
+ * @param pixPerBase
+ */
+ private void drawCoverage(Graphics2D g2, int start, int end, float pixPerBase)
+ {
+ int scaleHeight = 0;
+ if(isShowScale())
+ {
+ drawScale(g2, start, end, pixPerBase, getHeight());
+ scaleHeight = 15;
+ }
+
+ int hgt = jspView.getVisibleRect().height-scaleHeight;
+ g2.translate(0, getHeight()-hgt-scaleHeight);
+ coverageView.draw(g2, getWidth(), hgt);
+ coverageView.drawMax(g2);
+ }
/**
* Draw a read that apparently has a read mate that is not in view.
--
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