From 82b2ec1d5b7f39f2ed8d97414efa9accd248dedf Mon Sep 17 00:00:00 2001
From: tcarver <tjc@sanger.ac.uk>
Date: Tue, 4 Feb 2014 16:59:09 +0000
Subject: [PATCH] add qualifier list
---
docs/menus.sgml | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/docs/menus.sgml b/docs/menus.sgml
index 4fcd2b458..3ed7b4a4e 100644
--- a/docs/menus.sgml
+++ b/docs/menus.sgml
@@ -834,6 +834,36 @@ Pressing the <LITERAL>Goto Feature</LITERAL> button has the same effect as the
LINKEND="GOTOMENU-GOTO-SELECTION-START"> for more).
</PARA>
</LISTITEM>
+ <LISTITEM>
+ <PARA>
+The <LITERAL>User Qualifiers</LITERAL> button opens a tool for maintaining
+user defined lists of qualifiers (i.e. qualifiers in the form tag = value pairs
+on separate lines) and the option to read qualifiers from <ULINK
+URL="http://www.geneontology.org/GO.format.shtml" TYPE="external">OBO</ULINK> formatted files or
+URLs. These can be optionally saved between sessions in the file '.artemis.qualifiers' in the
+home directory. In the intial screen (below) you are invited to import your
+qualifier list from the File menu.
+ </PARA>
+ <MEDIAOBJECT>
+ <IMAGEOBJECT>
+ <IMAGEDATA FORMAT="gif" FILEREF="qualifier_list.gif">
+ </IMAGEOBJECT>
+ </MEDIAOBJECT>
+
+ <PARA>
+When a qualifier list or OBO file has been added then it is possible to search for
+keywords and the qualifer added to the current feature or added to selected features
+in &prog;.
+ </PARA>
+
+ <MEDIAOBJECT>
+ <IMAGEOBJECT>
+ <IMAGEDATA FORMAT="gif" FILEREF="qualifier_list2.gif">
+ </IMAGEOBJECT>
+ </MEDIAOBJECT>
+
+
+ </LISTITEM>
</ITEMIZEDLIST>
</LISTITEM>
--
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