From 847d4b2465964d4401cb640b5a05f2679401b620 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Thu, 13 Feb 2014 10:02:48 +0000
Subject: [PATCH] ignore codon_start when writing out
---
uk/ac/sanger/artemis/io/GFFStreamFeature.java | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/uk/ac/sanger/artemis/io/GFFStreamFeature.java b/uk/ac/sanger/artemis/io/GFFStreamFeature.java
index 9c8ec448a..268196414 100644
--- a/uk/ac/sanger/artemis/io/GFFStreamFeature.java
+++ b/uk/ac/sanger/artemis/io/GFFStreamFeature.java
@@ -754,10 +754,11 @@ public class GFFStreamFeature extends SimpleDocumentFeature implements
continue;
// skip internal qualifiers
- if ((this_qualifier.getName().equals("private") && System
- .getProperty("noprivate") != null)
- || (this_qualifier.getName().equals("history") && System
- .getProperty("nohistory") != null))
+ if ( (this_qualifier.getName().equals("private") &&
+ System.getProperty("noprivate") != null) ||
+ (this_qualifier.getName().equals("history") &&
+ System.getProperty("nohistory") != null) ||
+ this_qualifier.getName().equals("codon_start"))
continue;
abuf.add(this_qualifier.getName(), this_qualifier.getValues());
--
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