diff --git a/uk/ac/sanger/artemis/chado/ChadoTransactionManager.java b/uk/ac/sanger/artemis/chado/ChadoTransactionManager.java index c3006164410f421653c1f9a2bfe58fed068fc9cc..d68ec76377f2e4bb672514337162e8fd216613d8 100644 --- a/uk/ac/sanger/artemis/chado/ChadoTransactionManager.java +++ b/uk/ac/sanger/artemis/chado/ChadoTransactionManager.java @@ -137,6 +137,8 @@ public class ChadoTransactionManager public static String PRODUCT_DB = "PRODUCT"; public static String PRODUCT_CV = Options.getOptions().getProperty("product_cvname"); + public static String PRIVATE_CV = + Options.getOptions().getProperty("private_cvname"); // number of SQL commands successfully processed during a commit public static int commitReturnValue = 0; @@ -156,6 +158,10 @@ public class ChadoTransactionManager if(Options.getOptions().getPropertyTruthValue("product_cv")) { logger4j.debug("PRODUCT STORED AS A CV (product_cv=yes) IN "+PRODUCT_CV); + int nsize = 4; + if(PRIVATE_CV != null) + nsize++; + CV_NAME = new String[] { "GO", "controlled_curation", @@ -165,11 +171,17 @@ public class ChadoTransactionManager else { logger4j.debug("PRODUCT STORED AS A FEATUREPROP (product_cv=no)"); + int nsize = 3; + if(PRIVATE_CV != null) + nsize++; + CV_NAME = new String[] { "GO", "controlled_curation", "class" }; } + if(PRIVATE_CV != null) + CV_NAME[CV_NAME.length-1] = "private"; logger4j.debug("SYNONYM NAMES ARE STORED IN "+SYNONYM_TAG_CVNAME); } @@ -2304,6 +2316,8 @@ public class ChadoTransactionManager cvName = "CC_"; else if(qualifier_name.equals("product")) cvName = PRODUCT_CV; + else if(qualifier_name.equals("private")) + cvName = PRIVATE_CV; for(int i=0; i<strings.size(); i++) {