From 88d9b6a4311cf1aac6df242deaca8ced896bd60e Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Wed, 24 Feb 2010 14:23:28 +0000
Subject: [PATCH] add option of adding private qualifiers as a feature_cvterm
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13326 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../artemis/chado/ChadoTransactionManager.java | 14 ++++++++++++++
1 file changed, 14 insertions(+)
diff --git a/uk/ac/sanger/artemis/chado/ChadoTransactionManager.java b/uk/ac/sanger/artemis/chado/ChadoTransactionManager.java
index c30061644..d68ec7637 100644
--- a/uk/ac/sanger/artemis/chado/ChadoTransactionManager.java
+++ b/uk/ac/sanger/artemis/chado/ChadoTransactionManager.java
@@ -137,6 +137,8 @@ public class ChadoTransactionManager
public static String PRODUCT_DB = "PRODUCT";
public static String PRODUCT_CV =
Options.getOptions().getProperty("product_cvname");
+ public static String PRIVATE_CV =
+ Options.getOptions().getProperty("private_cvname");
// number of SQL commands successfully processed during a commit
public static int commitReturnValue = 0;
@@ -156,6 +158,10 @@ public class ChadoTransactionManager
if(Options.getOptions().getPropertyTruthValue("product_cv"))
{
logger4j.debug("PRODUCT STORED AS A CV (product_cv=yes) IN "+PRODUCT_CV);
+ int nsize = 4;
+ if(PRIVATE_CV != null)
+ nsize++;
+
CV_NAME = new String[]
{ "GO",
"controlled_curation",
@@ -165,11 +171,17 @@ public class ChadoTransactionManager
else
{
logger4j.debug("PRODUCT STORED AS A FEATUREPROP (product_cv=no)");
+ int nsize = 3;
+ if(PRIVATE_CV != null)
+ nsize++;
+
CV_NAME = new String[]
{ "GO",
"controlled_curation",
"class" };
}
+ if(PRIVATE_CV != null)
+ CV_NAME[CV_NAME.length-1] = "private";
logger4j.debug("SYNONYM NAMES ARE STORED IN "+SYNONYM_TAG_CVNAME);
}
@@ -2304,6 +2316,8 @@ public class ChadoTransactionManager
cvName = "CC_";
else if(qualifier_name.equals("product"))
cvName = PRODUCT_CV;
+ else if(qualifier_name.equals("private"))
+ cvName = PRIVATE_CV;
for(int i=0; i<strings.size(); i++)
{
--
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