diff --git a/uk/ac/sanger/artemis/components/variant/VCFview.java b/uk/ac/sanger/artemis/components/variant/VCFview.java index bba9abe290dc7d6dffa2c7747003c6195f58cef5..f2ed401618b0a5129d95cf3815186d0740600100 100644 --- a/uk/ac/sanger/artemis/components/variant/VCFview.java +++ b/uk/ac/sanger/artemis/components/variant/VCFview.java @@ -957,7 +957,7 @@ public class VCFview extends JPanel msg += "ID: "+mouseVCF.getID()+"\n"; msg += "Variant: "+mouseVCF.getRef()+" -> "+mouseVCF.getAlt().toString()+"\n"; msg += "Qual: "+mouseVCF.getQuality()+"\n"; - String pl[]; + String dp; if(splitSamples && mouseOverSampleIndex >= 0) { @@ -966,14 +966,9 @@ public class VCFview extends JPanel msg += "\n"; msg += mouseVCF.getFormatValueForSample(mouseOverSampleIndex); } - else if((pl = mouseVCF.getFormatValues("PL")) != null) + else if((dp = mouseVCF.getInfoValue("DP")) != null) { - msg += "Genotype likelihood (PL):\n"; - if(mouseOverSampleIndex < 0) - for(String p: pl) - msg += p+"\n"; - else - msg += pl[mouseOverSampleIndex]+"\n"; + msg += "DP:"+dp; } return msg; }