From 8c782d394c953d5f69fbcfd24e4c341c4de9c881 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Thu, 5 Jan 2012 12:48:55 +0000
Subject: [PATCH] fix tooltip
---
uk/ac/sanger/artemis/components/variant/VCFview.java | 11 +++--------
1 file changed, 3 insertions(+), 8 deletions(-)
diff --git a/uk/ac/sanger/artemis/components/variant/VCFview.java b/uk/ac/sanger/artemis/components/variant/VCFview.java
index bba9abe29..f2ed40161 100644
--- a/uk/ac/sanger/artemis/components/variant/VCFview.java
+++ b/uk/ac/sanger/artemis/components/variant/VCFview.java
@@ -957,7 +957,7 @@ public class VCFview extends JPanel
msg += "ID: "+mouseVCF.getID()+"\n";
msg += "Variant: "+mouseVCF.getRef()+" -> "+mouseVCF.getAlt().toString()+"\n";
msg += "Qual: "+mouseVCF.getQuality()+"\n";
- String pl[];
+ String dp;
if(splitSamples && mouseOverSampleIndex >= 0)
{
@@ -966,14 +966,9 @@ public class VCFview extends JPanel
msg += "\n";
msg += mouseVCF.getFormatValueForSample(mouseOverSampleIndex);
}
- else if((pl = mouseVCF.getFormatValues("PL")) != null)
+ else if((dp = mouseVCF.getInfoValue("DP")) != null)
{
- msg += "Genotype likelihood (PL):\n";
- if(mouseOverSampleIndex < 0)
- for(String p: pl)
- msg += p+"\n";
- else
- msg += pl[mouseOverSampleIndex]+"\n";
+ msg += "DP:"+dp;
}
return msg;
}
--
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