From 8ffde199edfe7690bae26629071fb3cc2babc9d5 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Mon, 26 Nov 2012 15:59:23 +0000
Subject: [PATCH] update
---
Makefile | 8 ++++++--
1 file changed, 6 insertions(+), 2 deletions(-)
diff --git a/Makefile b/Makefile
index ea9c6bdb1..ee0a2a5d0 100644
--- a/Makefile
+++ b/Makefile
@@ -275,6 +275,10 @@ artemis.jar : $(CLASSES)
jar xvf $$fileJar; \
rm -rf META-INF/MANIFEST.MF; \
done; \
+ for fileJar in ../lib/batik/*.jar; do \
+ jar xvf $$fileJar; \
+ rm -rf META-INF/MANIFEST.MF; \
+ done; \
for fileJar in ../lib/picard/*.jar; do \
jar xvf $$fileJar; \
rm -rf META-INF/MANIFEST.MF; \
@@ -291,9 +295,9 @@ artemis.jar : $(CLASSES)
artemis_sqlmap org uk com net nsdb type seqdb LICENSE.Apache j2ssh.properties; \
echo "Main-Class: uk.ac.sanger.artemis.circular.DNADraw" > manifest-circular; \
jar cmf manifest-circular DNAPlotter.jar images/PSUlogo.gif README etc \
- uk org/gmod org/apache org/biojava/bio/ com/ibatis/common/jdbc/ LICENSE.Apache j2ssh.properties; \
+ uk org/gmod org/w3c org/apache org/biojava/bio/ com/ibatis/common/jdbc/ net/sf/samtools/ LICENSE.Apache j2ssh.properties; \
echo "Main-Class: uk.ac.sanger.artemis.components.alignment.BamView" > manifest-bamview; \
- jar cmf manifest-bamview BamView.jar etc uk org net/sf com/ibatis; \
+ jar cmf manifest-bamview BamView.jar etc uk org/apache org/biojava org/biojavax org/gmod org/w3c net/sf com/ibatis; \
echo "Main-Class: uk.ac.sanger.artemis.components.ActMain" > manifest-act; \
jar cmf manifest-act act.jar images/PSUlogo.gif images/icon.gif README etc \
artemis_sqlmap org uk com net nsdb type seqdb LICENSE.Apache j2ssh.properties; \
--
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