From 91b774e8393afd285f612fc0c88bc8a8e57e7d38 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Fri, 8 May 2009 12:48:22 +0000
Subject: [PATCH] make PubDbXRef.xml
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10761 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
artemis_sqlmap/Pub.xml | 22 ---------------
artemis_sqlmap/PubDbXRef.xml | 39 ++++++++++++++++++++++++++
artemis_sqlmap/chado_iBatis_config.xml | 2 +-
3 files changed, 40 insertions(+), 23 deletions(-)
create mode 100644 artemis_sqlmap/PubDbXRef.xml
diff --git a/artemis_sqlmap/Pub.xml b/artemis_sqlmap/Pub.xml
index a678b80b5..08f38961c 100644
--- a/artemis_sqlmap/Pub.xml
+++ b/artemis_sqlmap/Pub.xml
@@ -9,9 +9,6 @@
<typeAlias alias="Pub"
type="org.gmod.schema.pub.Pub"/>
-
- <typeAlias alias="PubDbXRef"
- type="org.gmod.schema.pub.PubDbXRef"/>
<resultMap id="select-pub"
class="Pub">
@@ -30,17 +27,6 @@
<result property="pubPlace" column="pubplace" />
<result property="cvTerm" column="type_id" select="getCvtermByCvTermId" />
</resultMap>
-
- <resultMap id="select-pubdbxref" class="PubDbXRef">
- <result property="pub.pubId" column="pub_id" />
- <result property="dbXRef.accession" column="accession" />
- <result property="dbXRef.version" column="version" />
- <result property="dbXRef.description" column="dbx_description" />
- <result property="dbXRef.db.name" column="name" />
- <result property="dbXRef.db.description" column="description" />
- <result property="dbXRef.db.urlPrefix" column="urlprefix" />
- <result property="dbXRef.db.url" column="url" />
- </resultMap>
<!-- SQL -->
@@ -51,14 +37,6 @@
<select id="getPubByUniqueName" resultMap="select-pub">
SELECT * FROM pub WHERE uniquename=#uniqueName#
</select>
-
- <select id="getPubDbXRef" resultMap="select-pubdbxref">
- select pub_id, pub_dbxref.dbxref_id,
- accession, version, dbx.description AS dbx_description,
- db.name, db.description, db.urlprefix, db.url FROM pub_dbxref
- LEFT JOIN dbxref dbx ON pub_dbxref.dbxref_id=dbx.dbxref_id
- LEFT JOIN db ON db.db_id=dbx.db_id
- </select>
<!-- WRITE BACK -->
<insert id="insertPub" parameterClass="Pub">
diff --git a/artemis_sqlmap/PubDbXRef.xml b/artemis_sqlmap/PubDbXRef.xml
new file mode 100644
index 000000000..484d88eb7
--- /dev/null
+++ b/artemis_sqlmap/PubDbXRef.xml
@@ -0,0 +1,39 @@
+<?xml version="1.0" encoding="UTF-8" ?>
+
+<!DOCTYPE sqlMap
+ PUBLIC "-//ibatis.apache.org//DTD SQL Map 2.0//EN"
+ "http://ibatis.apache.org/dtd/sql-map-2.dtd">
+
+
+<sqlMap namespace="PubDbXRef">
+
+ <typeAlias alias="PubDbXRef"
+ type="org.gmod.schema.pub.PubDbXRef"/>
+
+ <resultMap id="select-pubdbxref" class="PubDbXRef">
+ <result property="pub.pubId" column="pub_id" />
+ <result property="dbXRef.accession" column="accession" />
+ <result property="dbXRef.version" column="version" />
+ <result property="dbXRef.description" column="dbx_description" />
+ <result property="dbXRef.db.name" column="name" />
+ <result property="dbXRef.db.description" column="description" />
+ <result property="dbXRef.db.urlPrefix" column="urlprefix" />
+ <result property="dbXRef.db.url" column="url" />
+ </resultMap>
+
+ <!-- SQL -->
+
+ <select id="getPubDbXRef" resultMap="select-pubdbxref">
+ select pub_id, pub_dbxref.dbxref_id,
+ accession, version, dbx.description AS dbx_description,
+ db.name, db.description, db.urlprefix, db.url FROM pub_dbxref
+ LEFT JOIN dbxref dbx ON pub_dbxref.dbxref_id=dbx.dbxref_id
+ LEFT JOIN db ON db.db_id=dbx.db_id
+ </select>
+
+ <!-- WRITE BACK -->
+ <insert id="insertPubDbXRef" parameterClass="PubDbXRef">
+ INSERT INTO pub_dbxref ( pub_id, dbxref_id )
+ VALUES ( $pub.pubId$, $dbXRef.dbXRefId$ )
+ </insert>
+</sqlMap>
\ No newline at end of file
diff --git a/artemis_sqlmap/chado_iBatis_config.xml b/artemis_sqlmap/chado_iBatis_config.xml
index adadbe890..9db915a0f 100644
--- a/artemis_sqlmap/chado_iBatis_config.xml
+++ b/artemis_sqlmap/chado_iBatis_config.xml
@@ -75,11 +75,11 @@
<!-- Identify all SQL Map XML files to be loaded by this SQL map. Notice the paths
are relative to the classpath. -->
-
<sqlMap resource="artemis_sqlmap/Cv.xml" />
<sqlMap resource="artemis_sqlmap/CvTerm.xml" />
<sqlMap resource="artemis_sqlmap/Pub.xml" />
+ <sqlMap resource="artemis_sqlmap/PubDbXRef.xml" />
<sqlMap resource="artemis_sqlmap/Feature.xml" />
<sqlMap resource="artemis_sqlmap/Organism.xml" />
<sqlMap resource="artemis_sqlmap/OrganismProp.xml" />
--
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