From 92513a4c27a5621cebe4732560077146c3fd31b5 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Mon, 8 Sep 2008 13:04:16 +0000
Subject: [PATCH] look for supercontigs
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8743 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
artemis_sqlmap/Feature.xml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/artemis_sqlmap/Feature.xml b/artemis_sqlmap/Feature.xml
index d85772d9d..28d6b8cda 100644
--- a/artemis_sqlmap/Feature.xml
+++ b/artemis_sqlmap/Feature.xml
@@ -431,7 +431,7 @@
LEFT JOIN organism ON organism.organism_id=feature.organism_id
WHERE <isNotNull> feature.organism_id=$value$ AND </isNotNull>
( cvterm.name LIKE '%chromosome%' OR cvterm.name LIKE '%sequence%' OR
- cvterm.name IN ('ultra_scaffold', 'golden_path_region', 'contig') )
+ cvterm.name IN ('supercontig', 'ultra_scaffold', 'golden_path_region', 'contig') )
AND residues notnull AND residues != '' ORDER BY common_name
</select>
@@ -444,7 +444,7 @@
LEFT JOIN organism ON organism.organism_id=feature.organism_id
WHERE <isNotNull> organism.common_name=#value# AND </isNotNull>
( cvterm.name LIKE '%chromosome%' OR cvterm.name LIKE '%sequence%' OR
- cvterm.name IN ('ultra_scaffold', 'golden_path_region', 'contig') )
+ cvterm.name IN ('supercontig', 'ultra_scaffold', 'golden_path_region', 'contig') )
AND residues notnull AND residues != '' ORDER BY common_name
</select>
--
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