From 97482fcc2717db91c72b92f2f61f59eb982fecee Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Wed, 23 Sep 2009 15:45:43 +0000
Subject: [PATCH] fix for base view
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11886 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/components/alignment/JamView.java | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/components/alignment/JamView.java b/uk/ac/sanger/artemis/components/alignment/JamView.java
index a167abadf..993a12248 100644
--- a/uk/ac/sanger/artemis/components/alignment/JamView.java
+++ b/uk/ac/sanger/artemis/components/alignment/JamView.java
@@ -382,7 +382,7 @@ public class JamView extends JPanel
else
readFromBam(start, end);
- if(!checkBoxStackView.isSelected())
+ if(!checkBoxStackView.isSelected() || pixPerBase*3 >= ALIGNMENT_PIX_PER_BASE)
Collections.sort(readsInView, new SAMRecordComparator());
setCursor(cdone);
}
--
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