From 99b43ed075e583aae54c3062a442dea1b903c45b Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Fri, 9 Feb 2007 17:04:48 +0000
Subject: [PATCH] add class and getCvTermByCvTermId
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@5346 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../sanger/artemis/util/DatabaseDocument.java | 19 +++++++++++++++++++
1 file changed, 19 insertions(+)
diff --git a/uk/ac/sanger/artemis/util/DatabaseDocument.java b/uk/ac/sanger/artemis/util/DatabaseDocument.java
index ea6ff6706..f21bd65e7 100644
--- a/uk/ac/sanger/artemis/util/DatabaseDocument.java
+++ b/uk/ac/sanger/artemis/util/DatabaseDocument.java
@@ -117,6 +117,7 @@ public class DatabaseDocument extends Document
"CC_";
/** product controlled vocabulary */
public static String PRODUCTS_TAG_CVNAME = "genedb_products";
+ public static String RILEY_TAG_CVNAME = "RILEY";
/**
*
@@ -1056,6 +1057,11 @@ public class DatabaseDocument extends Document
attr_buff.append("product=");
attr_buff.append(feature_cvterm.getCvTerm().getName()+";");
}
+ else if(cvterm.getCv().getName().equals(DatabaseDocument.RILEY_TAG_CVNAME))
+ {
+ attr_buff.append("class=");
+ attr_buff.append(dbXRef.getAccession()+"::"+feature_cvterm.getCvTerm().getCvTermId());
+ }
else
{
attr_buff.append("GO=");
@@ -1249,6 +1255,19 @@ public class DatabaseDocument extends Document
return null;
}
+ public static CvTerm getCvTermByCvTermId(final int cvTermId)
+ {
+ Enumeration enum_cvterm = cvterms.elements();
+ while(enum_cvterm.hasMoreElements())
+ {
+ CvTerm cvterm = (CvTerm)enum_cvterm.nextElement();
+ if(cvterm.getCvTermId() == cvTermId)
+ return cvterm;
+ }
+
+ return null;
+ }
+
public static CvTerm getCvTermByCvAndCvTerm(final String cvterm_name,
final String cvName)
{
--
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