diff --git a/etc/options b/etc/options index 39a6304cc73ffc08ffddcc85161cdf43916ae48a..9248456338f6ef6f625b39c20bc0d97b4ec22ea4 100644 --- a/etc/options +++ b/etc/options @@ -2,7 +2,7 @@ # (Note that comment lines start with a hash (#) symbol) -# $Header: //tmp/pathsoft/artemis/etc/options,v 1.10 2004-08-09 14:32:39 tjc Exp $ +# $Header: //tmp/pathsoft/artemis/etc/options,v 1.11 2004-09-30 12:42:21 tjc Exp $ # This file should contain option settings that look like this: # @@ -142,6 +142,15 @@ colour_15 = 255 63 63 colour_16 = 255 127 127 colour_17 = 255 191 191 +# GeneDB colours +# +colour_101 = 102 51 153 +colour_102 = 153 102 204 +colour_103 = 255 248 220 + +# +# + colour_of_CDS = 5 colour_of_cds? = 7 colour_of_BLASTCDS = 2 @@ -479,6 +488,9 @@ invisible_qualifiers = \ # These pairs consist of a program name and a parameter string. # For blast and fasta the parameter string is the name of the database to # search. +# +# /nfs/pathsoft/databases/GO/new +# /nfs/pathsoft/databases/protein/go_all feature_protein_programs = \ fasta %uniprot \ fasta %uniprot_archaea \ @@ -498,7 +510,8 @@ feature_protein_programs = \ blastp %uniprot_rest \ blastp psu/Kineto_aa \ tblastn %embl_other \ - blastp+go /nfs/pathsoft/databases/protein/go_all \ + blastp+go psu/go_all \ + blastp+go /nfs/pathsoft/databases/GO/new/go_all \ hth - \ smart - \ clustalx PROTEIN \ @@ -514,6 +527,8 @@ feature_dna_programs = \ application_programs = \ jalview +mess_fasta_hits = 10 + # this is the list of keys that should be displayed by default in the edit # window common_keys = \