From 9b51cc56afb95ac30ab924835a54cbc225a25b63 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Wed, 16 Jan 2013 10:41:31 +0000
Subject: [PATCH] catch nullpointer
---
.../chado/ClusterLazyQualifierValue.java | 20 ++++++++++++-------
1 file changed, 13 insertions(+), 7 deletions(-)
diff --git a/uk/ac/sanger/artemis/chado/ClusterLazyQualifierValue.java b/uk/ac/sanger/artemis/chado/ClusterLazyQualifierValue.java
index 8df8d510b..e81ae4f62 100644
--- a/uk/ac/sanger/artemis/chado/ClusterLazyQualifierValue.java
+++ b/uk/ac/sanger/artemis/chado/ClusterLazyQualifierValue.java
@@ -388,17 +388,23 @@ public class ClusterLazyQualifierValue implements LazyQualifierValue
if(!subjectFeature.getCvTerm().getName().equals("gene") ||
!subjectFeature.getCvTerm().getName().equals("pseudogene"))
{
- Feature parent = getParentFeature(subjectFeature);
-
- if(parent.getCvTerm().getName().equals("gene") ||
- parent.getCvTerm().getName().equals("pseudogene"))
- geneName = parent.getUniqueName();
- else if(parent != null)
+ Feature parent = getParentFeature(subjectFeature);
+ try
{
- parent = getParentFeature(parent);
if(parent.getCvTerm().getName().equals("gene") ||
parent.getCvTerm().getName().equals("pseudogene"))
geneName = parent.getUniqueName();
+ else if(parent != null)
+ {
+ parent = getParentFeature(parent);
+ if(parent.getCvTerm().getName().equals("gene") ||
+ parent.getCvTerm().getName().equals("pseudogene"))
+ geneName = parent.getUniqueName();
+ }
+ }
+ catch(NullPointerException npe)
+ {
+ System.err.println(geneName+" parent not found");
}
}
return geneName;
--
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