diff --git a/uk/ac/sanger/artemis/editor/FastaTextPane.java b/uk/ac/sanger/artemis/editor/FastaTextPane.java index 68b1db786580437f35c8617ac749bd42f6803e4e..b4db2cbab5b13d38468edf837094ca14802c5d07 100644 --- a/uk/ac/sanger/artemis/editor/FastaTextPane.java +++ b/uk/ac/sanger/artemis/editor/FastaTextPane.java @@ -948,14 +948,15 @@ public class FastaTextPane extends JScrollPane * Link Uniprot to the another database (e.g. EMBL or ENZYME) * */ - protected static String getUniprotLinkToDatabase(File fgetz, File fmfetch, HitInfo hit, - String env[], String DB) + protected static String getUniprotLinkToDatabase(final File fgetz, final File fmfetch, + final HitInfo hit, + final String env[], final String DB) { String res = null; if(fmfetch.exists()) { - String cmd[] = { "mfetch", "-p", "22140", "-f", "id", + final String cmd[] = { "mfetch", "-p", "22140", "-f", "id", "-d", "uniprot", "-i", "acc:"+hit.getID(), "-l", DB }; @@ -966,7 +967,7 @@ public class FastaTextPane extends JScrollPane } else if(remoteMfetch) { - String cmd = + final String cmd = "mfetch -p 22140 -f id -d uniprot -i \"acc:"+hit.getID()+"\" -l "+DB ; uk.ac.sanger.artemis.j2ssh.SshPSUClient ssh = new uk.ac.sanger.artemis.j2ssh.SshPSUClient(cmd);