From 9cbb559944e99b9d80d5b6ec6a88f0f52a1a7fd8 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Fri, 30 Mar 2007 13:56:59 +0000
Subject: [PATCH] tidy
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@5842 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/editor/FastaTextPane.java | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/uk/ac/sanger/artemis/editor/FastaTextPane.java b/uk/ac/sanger/artemis/editor/FastaTextPane.java
index 68b1db786..b4db2cbab 100644
--- a/uk/ac/sanger/artemis/editor/FastaTextPane.java
+++ b/uk/ac/sanger/artemis/editor/FastaTextPane.java
@@ -948,14 +948,15 @@ public class FastaTextPane extends JScrollPane
* Link Uniprot to the another database (e.g. EMBL or ENZYME)
*
*/
- protected static String getUniprotLinkToDatabase(File fgetz, File fmfetch, HitInfo hit,
- String env[], String DB)
+ protected static String getUniprotLinkToDatabase(final File fgetz, final File fmfetch,
+ final HitInfo hit,
+ final String env[], final String DB)
{
String res = null;
if(fmfetch.exists())
{
- String cmd[] = { "mfetch", "-p", "22140", "-f", "id",
+ final String cmd[] = { "mfetch", "-p", "22140", "-f", "id",
"-d", "uniprot", "-i", "acc:"+hit.getID(),
"-l", DB };
@@ -966,7 +967,7 @@ public class FastaTextPane extends JScrollPane
}
else if(remoteMfetch)
{
- String cmd =
+ final String cmd =
"mfetch -p 22140 -f id -d uniprot -i \"acc:"+hit.getID()+"\" -l "+DB ;
uk.ac.sanger.artemis.j2ssh.SshPSUClient ssh =
new uk.ac.sanger.artemis.j2ssh.SshPSUClient(cmd);
--
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