diff --git a/uk/ac/sanger/artemis/components/alignment/BamView.java b/uk/ac/sanger/artemis/components/alignment/BamView.java index 5f394637f873969dc8e786fd45ece5ebde04efc9..891e4387074c127336fc956bb544d7367e35c96d 100644 --- a/uk/ac/sanger/artemis/components/alignment/BamView.java +++ b/uk/ac/sanger/artemis/components/alignment/BamView.java @@ -210,6 +210,7 @@ public class BamView extends JPanel private CoveragePanel coverageView = new CoveragePanel(); + protected static String BAM_SUFFIX = ".*\\.(bam|cram)$"; /** Used to colour the frames. */ private static Color LIGHT_GREY = new Color(200, 200, 200); private static Color DARK_GREEN = new Color(0, 150, 0); @@ -2240,10 +2241,10 @@ public class BamView extends JPanel { FileSelectionDialog bamFileSelection = new FileSelectionDialog( null, false, "BamView", "BAM"); - List<String> bamFiles = bamFileSelection.getFiles(".*\\.(bam|cram)$"); + List<String> bamFiles = bamFileSelection.getFiles(BAM_SUFFIX); int count = bamList.size(); - bamList.addAll(bamFileSelection.getFiles(".*\\.(bam|cram)$")); + bamList.addAll(bamFileSelection.getFiles(BAM_SUFFIX)); for(int i=0; i<bamFiles.size(); i++) addToViewMenu(i+count); @@ -3670,7 +3671,7 @@ public class BamView extends JPanel System.setProperty("default_directory", System.getProperty("user.dir")); FileSelectionDialog fileSelection = new FileSelectionDialog( null, true, "BamView", "BAM"); - bam = fileSelection.getFiles(".*\\.(bam|cram)$"); + bam = fileSelection.getFiles(BAM_SUFFIX); reference = fileSelection.getReferenceFile(); if(reference == null || reference.equals("")) reference = null;