diff --git a/lib/j2ssh/j2ssh.properties b/lib/j2ssh/j2ssh.properties index eeb9581e0228ff855ca2c05ece3e212bc9c7780d..ee97c8a7fb869655df2b031f49ab65280cb5d693 100644 --- a/lib/j2ssh/j2ssh.properties +++ b/lib/j2ssh/j2ssh.properties @@ -11,15 +11,12 @@ host=localhost # # Sanger options # -#bsub=bsub -q normal -n 1 -R 'select[blast && mem > 500] rusage[mem=500]' -bsub=bsub -q normal -n 1 -R 'select[mem > 500] rusage[mem=500]' +bsub=source .profile; bsub -q normal -n 1 -R 'select[mem > 500] rusage[mem=500]' blastp=-I /software/pathogen/psu_svn/trunk/genexec/perl/src/flexi_blast.pl -p blastx=-I /software/pathogen/psu_svn/trunk/genexec/perl/src/flexi_blast.pl -x tblastx=-I /software/pathogen/psu_svn/trunk/genexec/perl/src/flexi_blast.pl -tx blastn=-I /software/pathogen/psu_svn/trunk/genexec/perl/src/flexi_blast.pl -#fasta=-I /nfs/disk222/yeastpub/bio-soft/fasta/fasta33_t -B -S -q -b 100 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs -#fastx=-I /nfs/disk222/yeastpub/bio-soft/fasta/fastx33_t -B -S -q -b 40 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs fasta=-I /software/pathogen/external/bin/fasta34_t -B -S -q -b 100 -H -l /software/pathogen/external/etc/pubseqgbs fastx=-I /software/pathogen/external/bin/fastx34_t -B -S -q -b 40 -H -l /software/pathogen/external/etc/pubseqgbs