diff --git a/art b/art index c5c6cf31eec64696dd2627d6f0c3db400780b648..180d77379adb6537595fc1b98b8891c9afaf550f 100755 --- a/art +++ b/art @@ -104,6 +104,9 @@ OPTIONS -Dbam=FILE[,FILE2,...] Open one or more BAM, VCF or BCF files -DbamClone=n Open all BAMs in multiple (n > 1) panels -Dbam[1,2,..]=FILE[,FILE2,..] Open BAMs in separate panels + -Dshow_snps Show SNP marks in BamView + -Dshow_snp_plot Open SNP plot in BamView + -Dshow_cov_plot Open coverage plot in BamView -Dshow_forward_lines=? Hide/show forward frame lines [true,false] -Dshow_reverse_lines=? Hide/show reverse frame lines [true,false] -Dchado="h:p/d?u" Get Artemis to open this CHADO database