From a9906a8db0398bc67d95312f6d945a1dfc87cb7c Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Thu, 21 Mar 2013 11:07:25 +0000
Subject: [PATCH] add command line options show_snps, show_snp_plot,
show_cov_plot
---
art | 3 +++
1 file changed, 3 insertions(+)
diff --git a/art b/art
index c5c6cf31e..180d77379 100755
--- a/art
+++ b/art
@@ -104,6 +104,9 @@ OPTIONS
-Dbam=FILE[,FILE2,...] Open one or more BAM, VCF or BCF files
-DbamClone=n Open all BAMs in multiple (n > 1) panels
-Dbam[1,2,..]=FILE[,FILE2,..] Open BAMs in separate panels
+ -Dshow_snps Show SNP marks in BamView
+ -Dshow_snp_plot Open SNP plot in BamView
+ -Dshow_cov_plot Open coverage plot in BamView
-Dshow_forward_lines=? Hide/show forward frame lines [true,false]
-Dshow_reverse_lines=? Hide/show reverse frame lines [true,false]
-Dchado="h:p/d?u" Get Artemis to open this CHADO database
--
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