From ae459df5305f623ab96ad12933d5d1abb237bb82 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Mon, 30 Jan 2012 09:38:52 +0000
Subject: [PATCH] fix for applying colour to nucleotides
---
uk/ac/sanger/artemis/components/SequenceViewer.java | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/components/SequenceViewer.java b/uk/ac/sanger/artemis/components/SequenceViewer.java
index cc901fd5f..e6fb5b1c4 100644
--- a/uk/ac/sanger/artemis/components/SequenceViewer.java
+++ b/uk/ac/sanger/artemis/components/SequenceViewer.java
@@ -290,7 +290,7 @@ public class SequenceViewer extends FileViewer {
StyleConstants.setBackground(style, colourHash.get(aa));
}
- final String seq = getText();
+ final String seq = getText().toUpperCase();
int seqStart = 0;
if(seq.startsWith(">"))
{
--
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