From b0c10b41eb5c874f92d6bf22be5b8b8634884dc6 Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Wed, 12 Jan 2011 14:45:14 +0000
Subject: [PATCH] add fasta extensions
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15325 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/io/IndexFastaStream.java | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/uk/ac/sanger/artemis/io/IndexFastaStream.java b/uk/ac/sanger/artemis/io/IndexFastaStream.java
index b8128b275..e02f58d0c 100644
--- a/uk/ac/sanger/artemis/io/IndexFastaStream.java
+++ b/uk/ac/sanger/artemis/io/IndexFastaStream.java
@@ -47,6 +47,12 @@ public class IndexFastaStream extends StreamSequence
private FastaSequenceIndex fastaIndex;
private int len;
private String contig;
+ static {
+ ReferenceSequenceFileFactory.FASTA_EXTENSIONS.add(".dna");
+ ReferenceSequenceFileFactory.FASTA_EXTENSIONS.add(".seq");
+ ReferenceSequenceFileFactory.FASTA_EXTENSIONS.add(".fas");
+ ReferenceSequenceFileFactory.FASTA_EXTENSIONS.add(".ffn");
+ }
public IndexFastaStream(Entry entry)
{
--
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