From b0cc9a1514ede9d8806a08ac810d21b96b560494 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Tue, 27 Aug 2013 10:19:24 +0100
Subject: [PATCH] fix for blank lines in GenBank sequence
---
uk/ac/sanger/artemis/io/GenbankStreamSequence.java | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/io/GenbankStreamSequence.java b/uk/ac/sanger/artemis/io/GenbankStreamSequence.java
index bdbe33642..add840798 100644
--- a/uk/ac/sanger/artemis/io/GenbankStreamSequence.java
+++ b/uk/ac/sanger/artemis/io/GenbankStreamSequence.java
@@ -203,7 +203,9 @@ public class GenbankStreamSequence extends StreamSequence
in_stream.getLineNumber());
}
}
- appendChar(this_line_sequence_buffer.toString().toLowerCase().toCharArray());
+
+ if(this_line_sequence_buffer.length() > 0)
+ appendChar(this_line_sequence_buffer.toString().toLowerCase().toCharArray());
}
setCounts();
}
--
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