From b2c6bdec5ba71fc200940e8ef745ee86d8803337 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Tue, 28 Feb 2012 16:30:22 +0000
Subject: [PATCH] update reference for IndexedGFFDocumentEntry
---
uk/ac/sanger/artemis/components/EntryGroupDisplay.java | 8 ++++++++
1 file changed, 8 insertions(+)
diff --git a/uk/ac/sanger/artemis/components/EntryGroupDisplay.java b/uk/ac/sanger/artemis/components/EntryGroupDisplay.java
index 8e08531f6..6e6718738 100644
--- a/uk/ac/sanger/artemis/components/EntryGroupDisplay.java
+++ b/uk/ac/sanger/artemis/components/EntryGroupDisplay.java
@@ -27,6 +27,7 @@ package uk.ac.sanger.artemis.components;
import uk.ac.sanger.artemis.*;
import uk.ac.sanger.artemis.io.IndexFastaStream;
+import uk.ac.sanger.artemis.io.IndexedGFFDocumentEntry;
import java.awt.*;
import java.awt.event.*;
@@ -242,6 +243,13 @@ public class EntryGroupDisplay extends JPanel
IndexFastaStream is = (IndexFastaStream)entry.getEMBLEntry().getSequence();
is.setContigByIndex(indexFastaCombo.getSelectedIndex());
+ EntryVector entries = entry_group.getActiveEntries();
+ for(int i=0; i<entries.size(); i++)
+ {
+ Entry entry = entries.elementAt(i);
+ if(entry.getEMBLEntry() instanceof IndexedGFFDocumentEntry)
+ ((IndexedGFFDocumentEntry)entry.getEMBLEntry()).updateReference(is.getContig(), false);
+ }
owning_component.resetScrolls();
owning_component.getFeatureDisplay().getBases().clearCodonCache();
owning_component.repaint();
--
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