From b37b11f9ae08c49daefc79ff7d6dd978d23fa6ee Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Mon, 23 Nov 2009 12:17:52 +0000
Subject: [PATCH] strip out non-embl parts of product line
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12411 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../sanger/artemis/io/PublicDBDocumentEntry.java | 16 ++++++++++++++--
1 file changed, 14 insertions(+), 2 deletions(-)
diff --git a/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java b/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java
index c4fae90cb..85000363d 100644
--- a/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java
+++ b/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java
@@ -339,8 +339,20 @@ public class PublicDBDocumentEntry extends SimpleDocumentEntry
for(int j=0; j<newValues.size(); j++)
{
String val = (String)newValues.get(j);
- if(val.startsWith("term=") && val.endsWith(";"))
- val = val.substring(5, val.length()-1);
+
+ int ind = 0;
+ if((ind=val.indexOf(";db_xref="))>-1)
+ val = val.substring(0,ind);
+
+ if((ind=val.indexOf(";evidence="))>-1)
+ val = val.substring(0,ind);
+
+ if(val.startsWith("term="))
+ val = val.substring(5, val.length());
+
+ if(val.endsWith(";"))
+ val = val.substring(0, val.length()-1);
+
tmpNewValues.add(val);
}
--
GitLab