From b394f21d82203bf1309222325e53b6cad5bde7de Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Tue, 3 Jul 2012 17:08:07 +0100
Subject: [PATCH] ensure synonyms are not duplicated when splitting and adding
a prev_sys_id
---
uk/ac/sanger/artemis/components/EditMenu.java | 11 +++++++++--
1 file changed, 9 insertions(+), 2 deletions(-)
diff --git a/uk/ac/sanger/artemis/components/EditMenu.java b/uk/ac/sanger/artemis/components/EditMenu.java
index cff413f49..63240d63e 100644
--- a/uk/ac/sanger/artemis/components/EditMenu.java
+++ b/uk/ac/sanger/artemis/components/EditMenu.java
@@ -1725,8 +1725,15 @@ public class EditMenu extends SelectionMenu
try
{
- ((Feature)gene1.getGene().getUserData()).addQualifierValues(synQualifier);
- ((Feature)gene2.getGene().getUserData()).addQualifierValues(synQualifier);
+ Qualifier originalQualifier =
+ ((Feature)gene1.getGene().getUserData()).getQualifierByName("previous_systematic_id");
+ if( originalQualifier == null ||
+ !originalQualifier.getValues().contains(prevId+";current=false"))
+ {
+ ((Feature)gene1.getGene().getUserData()).addQualifierValues(synQualifier);
+ ((Feature)gene2.getGene().getUserData()).addQualifierValues(synQualifier);
+ }
+
}
catch (Exception e){}
}
--
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