From b4f9140414b39496e9d78007167ffdfda838ffc9 Mon Sep 17 00:00:00 2001 From: Sascha Steinbiss <ss34@sanger.ac.uk> Date: Fri, 10 Jan 2014 16:29:18 +0000 Subject: [PATCH] make Makefile process all .java files --- Makefile | 414 +++++++++++++++++++++++++++++-------------------------- 1 file changed, 217 insertions(+), 197 deletions(-) diff --git a/Makefile b/Makefile index 3db90a766..7056271be 100644 --- a/Makefile +++ b/Makefile @@ -10,205 +10,225 @@ JAVAC := javac -source 1.5 -target 1.5 $(OPT_FLAGS) $(EXTRA_FLAGS) REAL_CLASSPATH := CLASSPATH=lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/picard/sam.jar:lib/commons-net-2.2.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. -NAMES:= \ - uk/ac/sanger/artemis/OptionChangeListener \ - uk/ac/sanger/artemis/OptionChangeEvent \ - uk/ac/sanger/artemis/Options \ - uk/ac/sanger/artemis/Selection \ - uk/ac/sanger/artemis/components/ArtemisMain \ - uk/ac/sanger/artemis/components/ActMain \ - uk/ac/sanger/artemis/components/Splash \ - uk/ac/sanger/artemis/components/ListDialog \ - uk/ac/sanger/artemis/components/FeatureListFrame \ - uk/ac/sanger/artemis/components/FeatureList \ - uk/ac/sanger/artemis/components/FeatureDisplay \ - uk/ac/sanger/artemis/components/CanvasPanel \ - uk/ac/sanger/artemis/components/EntryGroupDisplay \ - uk/ac/sanger/artemis/components/EntryHeaderEdit \ - uk/ac/sanger/artemis/components/BasePlotGroup \ - uk/ac/sanger/artemis/components/EntryEditVector \ - uk/ac/sanger/artemis/components/EntryEdit \ - uk/ac/sanger/artemis/components/WritableEMBLCorbaEntrySource \ - uk/ac/sanger/artemis/components/DbfetchEntrySource \ - uk/ac/sanger/artemis/components/EMBLCorbaEntrySource \ - uk/ac/sanger/artemis/components/CorbaEntrySource \ - uk/ac/sanger/artemis/components/BioJavaEntrySource \ - uk/ac/sanger/artemis/components/FileDialogEntrySource \ - uk/ac/sanger/artemis/components/EntryActionListener \ - uk/ac/sanger/artemis/components/DisplayComponent \ - uk/ac/sanger/artemis/components/EntryFileDialog \ - uk/ac/sanger/artemis/components/StickyFileChooser \ - uk/ac/sanger/artemis/components/LogReadListener \ - uk/ac/sanger/artemis/components/Selector \ - uk/ac/sanger/artemis/components/Navigator \ - uk/ac/sanger/artemis/components/EntryGroupPanel \ - uk/ac/sanger/artemis/components/FeaturePopup \ - uk/ac/sanger/artemis/components/WriteMenu \ - uk/ac/sanger/artemis/components/SelectMenu \ - uk/ac/sanger/artemis/components/GraphMenu \ - uk/ac/sanger/artemis/components/RunMenu \ - uk/ac/sanger/artemis/components/AddMenu \ - uk/ac/sanger/artemis/components/ViewMenu \ - uk/ac/sanger/artemis/components/GotoMenu \ - uk/ac/sanger/artemis/components/EditMenu \ - uk/ac/sanger/artemis/components/SelectionMenu \ - uk/ac/sanger/artemis/components/SelectionViewer \ - uk/ac/sanger/artemis/components/FeaturePlotGroup \ - uk/ac/sanger/artemis/components/FeaturePlot \ - uk/ac/sanger/artemis/components/FeatureEdit \ - uk/ac/sanger/artemis/components/FeatureViewer \ - uk/ac/sanger/artemis/components/SearchResultViewer \ - uk/ac/sanger/artemis/components/LogViewer \ - uk/ac/sanger/artemis/components/FileViewer \ - uk/ac/sanger/artemis/components/MessageFrame \ - uk/ac/sanger/artemis/components/MessageDialog \ - uk/ac/sanger/artemis/components/YesNoDialog \ - uk/ac/sanger/artemis/components/KeyChooser \ - uk/ac/sanger/artemis/components/KeyChoice \ - uk/ac/sanger/artemis/components/QualifierEditor \ - uk/ac/sanger/artemis/components/QualifierTextArea \ - uk/ac/sanger/artemis/components/QualifierChoice \ - uk/ac/sanger/artemis/components/ChoiceFrame \ - uk/ac/sanger/artemis/components/SelectionInfoDisplay \ - uk/ac/sanger/artemis/components/EntryGroupMenu \ - uk/ac/sanger/artemis/components/EntryGroupInfoDisplay \ - uk/ac/sanger/artemis/components/Utilities \ - uk/ac/sanger/artemis/components/MarkerRangeRequester \ - uk/ac/sanger/artemis/components/MarkerRangeRequesterListener \ - uk/ac/sanger/artemis/components/MarkerRangeRequesterEvent \ - uk/ac/sanger/artemis/components/TextRequester \ - uk/ac/sanger/artemis/components/TextRequesterListener \ - uk/ac/sanger/artemis/components/TextRequesterEvent \ - uk/ac/sanger/artemis/components/TextDialog \ - uk/ac/sanger/artemis/components/BasePlot \ - uk/ac/sanger/artemis/components/ProcessWatcher \ - uk/ac/sanger/artemis/components/ProcessWatcherEvent \ - uk/ac/sanger/artemis/components/ProcessWatcherListener \ - uk/ac/sanger/artemis/components/ExternalProgramOptions \ - uk/ac/sanger/artemis/components/Plot \ - uk/ac/sanger/artemis/components/PlotMouseListener \ - uk/ac/sanger/artemis/components/FeatureAminoAcidViewer \ - uk/ac/sanger/artemis/components/FeatureBaseViewer \ - uk/ac/sanger/artemis/components/SequenceViewer \ - uk/ac/sanger/artemis/components/FeatureInfo \ - uk/ac/sanger/artemis/components/DisplayAdjustmentListener \ - uk/ac/sanger/artemis/components/DisplayAdjustmentEvent \ - uk/ac/sanger/artemis/components/ScoreChanger \ - uk/ac/sanger/artemis/components/ScoreScrollbar \ - uk/ac/sanger/artemis/components/ScoreChangeListener \ - uk/ac/sanger/artemis/components/ScoreChangeEvent \ - uk/ac/sanger/artemis/components/InputStreamProgressDialog \ - uk/ac/sanger/artemis/plot/KarlinSigAlgorithm \ - uk/ac/sanger/artemis/plot/UserDataAlgorithm \ - uk/ac/sanger/artemis/plot/Codon12CorrelationAlgorithm \ - uk/ac/sanger/artemis/plot/ATDeviationAlgorithm \ - uk/ac/sanger/artemis/plot/GCDeviationAlgorithm \ - uk/ac/sanger/artemis/plot/GCFrameAlgorithm \ - uk/ac/sanger/artemis/plot/CodonUsageAlgorithm \ - uk/ac/sanger/artemis/plot/CodonUsageFormatException \ - uk/ac/sanger/artemis/plot/CodonUsageWeight \ - uk/ac/sanger/artemis/plot/CodonWeight \ - uk/ac/sanger/artemis/plot/AGWindowAlgorithm \ - uk/ac/sanger/artemis/plot/GCSDWindowAlgorithm \ - uk/ac/sanger/artemis/plot/GCWindowAlgorithm \ - uk/ac/sanger/artemis/plot/HydrophilicityAlgorithm \ - uk/ac/sanger/artemis/plot/HydroAlgorithm \ - uk/ac/sanger/artemis/plot/HydrophobicityAlgorithm \ - uk/ac/sanger/artemis/plot/CoilFeatureAlgorithm \ - uk/ac/sanger/artemis/plot/FeatureAlgorithm \ - uk/ac/sanger/artemis/plot/BaseAlgorithm \ - uk/ac/sanger/artemis/plot/Algorithm \ - uk/ac/sanger/artemis/Logger \ - uk/ac/sanger/artemis/ExternalProgramListener \ - uk/ac/sanger/artemis/ExternalProgramException \ - uk/ac/sanger/artemis/ExternalProgramVector \ - uk/ac/sanger/artemis/SimpleExternalProgramMonitor \ - uk/ac/sanger/artemis/ProcessMonitor \ - uk/ac/sanger/artemis/ProcessMonitor \ - uk/ac/sanger/artemis/ExternalProgramMonitor \ - uk/ac/sanger/artemis/ExternalProgram \ - uk/ac/sanger/artemis/EntryGroupChangeListener \ - uk/ac/sanger/artemis/EntryGroupChangeEvent \ - uk/ac/sanger/artemis/EntryChangeListener \ - uk/ac/sanger/artemis/EntryChangeEvent \ - uk/ac/sanger/artemis/FilteredEntryGroup \ - uk/ac/sanger/artemis/SimpleEntryGroup \ - uk/ac/sanger/artemis/EntryGroup \ - uk/ac/sanger/artemis/EntryVector \ - uk/ac/sanger/artemis/EntrySourceVector \ - uk/ac/sanger/artemis/EntrySource \ - uk/ac/sanger/artemis/Entry \ - uk/ac/sanger/artemis/LastSegmentException \ - uk/ac/sanger/artemis/FeatureFromVectorPredicate \ - uk/ac/sanger/artemis/FeatureKeyQualifierPredicate \ - uk/ac/sanger/artemis/FeatureKeyPredicate \ - uk/ac/sanger/artemis/FeaturePatternPredicate \ - uk/ac/sanger/artemis/FeaturePredicateConjunction \ - uk/ac/sanger/artemis/FeaturePredicate \ - uk/ac/sanger/artemis/FeaturePredicateVector \ - uk/ac/sanger/artemis/FeatureEnumeration \ - uk/ac/sanger/artemis/FeatureSegmentVector \ - uk/ac/sanger/artemis/FeatureChangeListener \ - uk/ac/sanger/artemis/FeatureChangeEvent \ - uk/ac/sanger/artemis/FeatureVector \ - uk/ac/sanger/artemis/Feature \ - uk/ac/sanger/artemis/FeatureSegment \ - uk/ac/sanger/artemis/ActionController \ - uk/ac/sanger/artemis/ActionVector \ - uk/ac/sanger/artemis/Action \ - uk/ac/sanger/artemis/ChangeListener \ - uk/ac/sanger/artemis/ChangeEventVector \ - uk/ac/sanger/artemis/ChangeEvent \ - uk/ac/sanger/artemis/GotoListener \ - uk/ac/sanger/artemis/GotoEvent \ - uk/ac/sanger/artemis/GotoEventSource \ - uk/ac/sanger/artemis/SimpleGotoEventSource \ - uk/ac/sanger/artemis/SelectionChangeListener \ - uk/ac/sanger/artemis/SelectionChangeEvent \ - uk/ac/sanger/artemis/Selectable \ - uk/ac/sanger/artemis/sequence/NoSequenceException \ - uk/ac/sanger/artemis/sequence/MarkerRangeVector \ - uk/ac/sanger/artemis/sequence/MarkerRange \ - uk/ac/sanger/artemis/sequence/MarkerChangeListener \ - uk/ac/sanger/artemis/sequence/MarkerChangeEvent \ - uk/ac/sanger/artemis/sequence/Marker \ - uk/ac/sanger/artemis/sequence/Strand \ - uk/ac/sanger/artemis/sequence/BasePatternFormatException \ - uk/ac/sanger/artemis/sequence/BasePattern \ - uk/ac/sanger/artemis/sequence/Bases \ - uk/ac/sanger/artemis/sequence/AminoAcidSequence \ - uk/ac/sanger/artemis/sequence/SequenceChangeListener \ - uk/ac/sanger/artemis/sequence/SequenceChangeEvent \ - uk/ac/sanger/artemis/io/BioJavaFeature \ - uk/ac/sanger/artemis/io/BioJavaSequence \ - uk/ac/sanger/artemis/io/BioJavaEntry \ - uk/ac/sanger/artemis/io/GenbankStreamSequence \ - uk/ac/sanger/artemis/io/RWCorbaEntry \ - uk/ac/sanger/artemis/io/CorbaEntry \ - uk/ac/sanger/artemis/io/DocumentEntryFactory \ - uk/ac/sanger/artemis/io/BlastDocumentEntry \ - uk/ac/sanger/artemis/io/MSPcrunchDocumentEntry \ - uk/ac/sanger/artemis/io/GFFDocumentEntry \ - uk/ac/sanger/artemis/io/GenbankDocumentEntry \ - uk/ac/sanger/artemis/io/EmblDocumentEntry \ - uk/ac/sanger/artemis/io/PublicDBDocumentEntry \ - uk/ac/sanger/artemis/io/SimpleDocumentEntry \ - uk/ac/sanger/artemis/io/DocumentEntry \ - uk/ac/sanger/artemis/io/Entry \ - uk/ac/sanger/artemis/io/ReadOnlyEntry \ - uk/ac/sanger/artemis/io/QualifierInfoException \ - uk/ac/sanger/artemis/io/QualifierInfo \ - uk/ac/sanger/artemis/io/QualifierInfoVector \ - uk/ac/sanger/artemis/io/QualifierInfoHash \ - uk/ac/sanger/artemis/chado/DbSqlConfig \ - uk/ac/sanger/artemis/circular/DNADraw \ - uk/ac/sanger/artemis/circular/digest/Utils \ - uk/ac/sanger/artemis/circular/digest/CircularGenomeController \ - uk/ac/sanger/artemis/io/GffToEMBL +# NAMES:= \ +# uk/ac/sanger/artemis/OptionChangeListener \ +# uk/ac/sanger/artemis/OptionChangeEvent \ +# uk/ac/sanger/artemis/Options \ +# uk/ac/sanger/artemis/Selection \ +# uk/ac/sanger/artemis/components/ArtemisMain \ +# uk/ac/sanger/artemis/components/ActMain \ +# uk/ac/sanger/artemis/components/Splash \ +# uk/ac/sanger/artemis/components/ListDialog \ +# uk/ac/sanger/artemis/components/FeatureListFrame \ +# uk/ac/sanger/artemis/components/FeatureList \ +# uk/ac/sanger/artemis/components/FeatureDisplay \ +# uk/ac/sanger/artemis/components/CanvasPanel \ +# uk/ac/sanger/artemis/components/EntryGroupDisplay \ +# uk/ac/sanger/artemis/components/EntryHeaderEdit \ +# uk/ac/sanger/artemis/components/BasePlotGroup \ +# uk/ac/sanger/artemis/components/EntryEditVector \ +# uk/ac/sanger/artemis/components/EntryEdit \ +# uk/ac/sanger/artemis/components/WritableEMBLCorbaEntrySource \ +# uk/ac/sanger/artemis/components/DbfetchEntrySource \ +# uk/ac/sanger/artemis/components/EMBLCorbaEntrySource \ +# uk/ac/sanger/artemis/components/CorbaEntrySource \ +# uk/ac/sanger/artemis/components/BioJavaEntrySource \ +# uk/ac/sanger/artemis/components/FileDialogEntrySource \ +# uk/ac/sanger/artemis/components/EntryActionListener \ +# uk/ac/sanger/artemis/components/DisplayComponent \ +# uk/ac/sanger/artemis/components/EntryFileDialog \ +# uk/ac/sanger/artemis/components/StickyFileChooser \ +# uk/ac/sanger/artemis/components/LogReadListener \ +# uk/ac/sanger/artemis/components/Selector \ +# uk/ac/sanger/artemis/components/Navigator \ +# uk/ac/sanger/artemis/components/EntryGroupPanel \ +# uk/ac/sanger/artemis/components/FeaturePopup \ +# uk/ac/sanger/artemis/components/WriteMenu \ +# uk/ac/sanger/artemis/components/SelectMenu \ +# uk/ac/sanger/artemis/components/GraphMenu \ +# uk/ac/sanger/artemis/components/RunMenu \ +# uk/ac/sanger/artemis/components/AddMenu \ +# uk/ac/sanger/artemis/components/ViewMenu \ +# uk/ac/sanger/artemis/components/GotoMenu \ +# uk/ac/sanger/artemis/components/EditMenu \ +# uk/ac/sanger/artemis/components/SelectionMenu \ +# uk/ac/sanger/artemis/components/SelectionViewer \ +# uk/ac/sanger/artemis/components/FeaturePlotGroup \ +# uk/ac/sanger/artemis/components/FeaturePlot \ +# uk/ac/sanger/artemis/components/FeatureEdit \ +# uk/ac/sanger/artemis/components/FeatureViewer \ +# uk/ac/sanger/artemis/components/SearchResultViewer \ +# uk/ac/sanger/artemis/components/LogViewer \ +# uk/ac/sanger/artemis/components/FileViewer \ +# uk/ac/sanger/artemis/components/MessageFrame \ +# uk/ac/sanger/artemis/components/MessageDialog \ +# uk/ac/sanger/artemis/components/YesNoDialog \ +# uk/ac/sanger/artemis/components/KeyChooser \ +# uk/ac/sanger/artemis/components/KeyChoice \ +# uk/ac/sanger/artemis/components/QualifierEditor \ +# uk/ac/sanger/artemis/components/QualifierTextArea \ +# uk/ac/sanger/artemis/components/QualifierChoice \ +# uk/ac/sanger/artemis/components/ChoiceFrame \ +# uk/ac/sanger/artemis/components/SelectionInfoDisplay \ +# uk/ac/sanger/artemis/components/EntryGroupMenu \ +# uk/ac/sanger/artemis/components/EntryGroupInfoDisplay \ +# uk/ac/sanger/artemis/components/Utilities \ +# uk/ac/sanger/artemis/components/MarkerRangeRequester \ +# uk/ac/sanger/artemis/components/MarkerRangeRequesterListener \ +# uk/ac/sanger/artemis/components/MarkerRangeRequesterEvent \ +# uk/ac/sanger/artemis/components/TextRequester \ +# uk/ac/sanger/artemis/components/TextRequesterListener \ +# uk/ac/sanger/artemis/components/TextRequesterEvent \ +# uk/ac/sanger/artemis/components/TextDialog \ +# uk/ac/sanger/artemis/components/BasePlot \ +# uk/ac/sanger/artemis/components/ProcessWatcher \ +# uk/ac/sanger/artemis/components/ProcessWatcherEvent \ +# uk/ac/sanger/artemis/components/ProcessWatcherListener \ +# uk/ac/sanger/artemis/components/ExternalProgramOptions \ +# uk/ac/sanger/artemis/components/Plot \ +# uk/ac/sanger/artemis/components/PlotMouseListener \ +# uk/ac/sanger/artemis/components/FeatureAminoAcidViewer \ +# uk/ac/sanger/artemis/components/FeatureBaseViewer \ +# uk/ac/sanger/artemis/components/SequenceViewer \ +# uk/ac/sanger/artemis/components/FeatureInfo \ +# uk/ac/sanger/artemis/components/DisplayAdjustmentListener \ +# uk/ac/sanger/artemis/components/DisplayAdjustmentEvent \ +# uk/ac/sanger/artemis/components/ScoreChanger \ +# uk/ac/sanger/artemis/components/ScoreScrollbar \ +# uk/ac/sanger/artemis/components/ScoreChangeListener \ +# uk/ac/sanger/artemis/components/ScoreChangeEvent \ +# uk/ac/sanger/artemis/components/InputStreamProgressDialog \ +# uk/ac/sanger/artemis/plot/KarlinSigAlgorithm \ +# uk/ac/sanger/artemis/plot/UserDataAlgorithm \ +# uk/ac/sanger/artemis/plot/Codon12CorrelationAlgorithm \ +# uk/ac/sanger/artemis/plot/ATDeviationAlgorithm \ +# uk/ac/sanger/artemis/plot/GCDeviationAlgorithm \ +# uk/ac/sanger/artemis/plot/GCFrameAlgorithm \ +# uk/ac/sanger/artemis/plot/CodonUsageAlgorithm \ +# uk/ac/sanger/artemis/plot/CodonUsageFormatException \ +# uk/ac/sanger/artemis/plot/CodonUsageWeight \ +# uk/ac/sanger/artemis/plot/CodonWeight \ +# uk/ac/sanger/artemis/plot/AGWindowAlgorithm \ +# uk/ac/sanger/artemis/plot/GCSDWindowAlgorithm \ +# uk/ac/sanger/artemis/plot/GCWindowAlgorithm \ +# uk/ac/sanger/artemis/plot/HydrophilicityAlgorithm \ +# uk/ac/sanger/artemis/plot/HydroAlgorithm \ +# uk/ac/sanger/artemis/plot/HydrophobicityAlgorithm \ +# uk/ac/sanger/artemis/plot/CoilFeatureAlgorithm \ +# uk/ac/sanger/artemis/plot/FeatureAlgorithm \ +# uk/ac/sanger/artemis/plot/BaseAlgorithm \ +# uk/ac/sanger/artemis/plot/Algorithm \ +# uk/ac/sanger/artemis/Logger \ +# uk/ac/sanger/artemis/ExternalProgramListener \ +# uk/ac/sanger/artemis/ExternalProgramException \ +# uk/ac/sanger/artemis/ExternalProgramVector \ +# uk/ac/sanger/artemis/SimpleExternalProgramMonitor \ +# uk/ac/sanger/artemis/ProcessMonitor \ +# uk/ac/sanger/artemis/ProcessMonitor \ +# uk/ac/sanger/artemis/ExternalProgramMonitor \ +# uk/ac/sanger/artemis/ExternalProgram \ +# uk/ac/sanger/artemis/EntryGroupChangeListener \ +# uk/ac/sanger/artemis/EntryGroupChangeEvent \ +# uk/ac/sanger/artemis/EntryChangeListener \ +# uk/ac/sanger/artemis/EntryChangeEvent \ +# uk/ac/sanger/artemis/FilteredEntryGroup \ +# uk/ac/sanger/artemis/SimpleEntryGroup \ +# uk/ac/sanger/artemis/EntryGroup \ +# uk/ac/sanger/artemis/EntryVector \ +# uk/ac/sanger/artemis/EntrySourceVector \ +# uk/ac/sanger/artemis/EntrySource \ +# uk/ac/sanger/artemis/Entry \ +# uk/ac/sanger/artemis/LastSegmentException \ +# uk/ac/sanger/artemis/FeatureFromVectorPredicate \ +# uk/ac/sanger/artemis/FeatureKeyQualifierPredicate \ +# uk/ac/sanger/artemis/FeatureKeyPredicate \ +# uk/ac/sanger/artemis/FeaturePatternPredicate \ +# uk/ac/sanger/artemis/FeaturePredicateConjunction \ +# uk/ac/sanger/artemis/FeaturePredicate \ +# uk/ac/sanger/artemis/FeaturePredicateVector \ +# uk/ac/sanger/artemis/FeatureEnumeration \ +# uk/ac/sanger/artemis/FeatureSegmentVector \ +# uk/ac/sanger/artemis/FeatureChangeListener \ +# uk/ac/sanger/artemis/FeatureChangeEvent \ +# uk/ac/sanger/artemis/FeatureVector \ +# uk/ac/sanger/artemis/Feature \ +# uk/ac/sanger/artemis/FeatureSegment \ +# uk/ac/sanger/artemis/ActionController \ +# uk/ac/sanger/artemis/ActionVector \ +# uk/ac/sanger/artemis/Action \ +# uk/ac/sanger/artemis/ChangeListener \ +# uk/ac/sanger/artemis/ChangeEventVector \ +# uk/ac/sanger/artemis/ChangeEvent \ +# uk/ac/sanger/artemis/GotoListener \ +# uk/ac/sanger/artemis/GotoEvent \ +# uk/ac/sanger/artemis/GotoEventSource \ +# uk/ac/sanger/artemis/SimpleGotoEventSource \ +# uk/ac/sanger/artemis/SelectionChangeListener \ +# uk/ac/sanger/artemis/SelectionChangeEvent \ +# uk/ac/sanger/artemis/Selectable \ +# uk/ac/sanger/artemis/sequence/NoSequenceException \ +# uk/ac/sanger/artemis/sequence/MarkerRangeVector \ +# uk/ac/sanger/artemis/sequence/MarkerRange \ +# uk/ac/sanger/artemis/sequence/MarkerChangeListener \ +# uk/ac/sanger/artemis/sequence/MarkerChangeEvent \ +# uk/ac/sanger/artemis/sequence/Marker \ +# uk/ac/sanger/artemis/sequence/Strand \ +# uk/ac/sanger/artemis/sequence/BasePatternFormatException \ +# uk/ac/sanger/artemis/sequence/BasePattern \ +# uk/ac/sanger/artemis/sequence/Bases \ +# uk/ac/sanger/artemis/sequence/AminoAcidSequence \ +# uk/ac/sanger/artemis/sequence/SequenceChangeListener \ +# uk/ac/sanger/artemis/sequence/SequenceChangeEvent \ +# uk/ac/sanger/artemis/io/BioJavaFeature \ +# uk/ac/sanger/artemis/io/BioJavaSequence \ +# uk/ac/sanger/artemis/io/BioJavaEntry \ +# uk/ac/sanger/artemis/io/GenbankStreamSequence \ +# uk/ac/sanger/artemis/io/RWCorbaEntry \ +# uk/ac/sanger/artemis/io/CorbaEntry \ +# uk/ac/sanger/artemis/io/DocumentEntryFactory \ +# uk/ac/sanger/artemis/io/BlastDocumentEntry \ +# uk/ac/sanger/artemis/io/MSPcrunchDocumentEntry \ +# uk/ac/sanger/artemis/io/GFFDocumentEntry \ +# uk/ac/sanger/artemis/io/GenbankDocumentEntry \ +# uk/ac/sanger/artemis/io/EmblDocumentEntry \ +# uk/ac/sanger/artemis/io/PublicDBDocumentEntry \ +# uk/ac/sanger/artemis/io/SimpleDocumentEntry \ +# uk/ac/sanger/artemis/io/DocumentEntry \ +# uk/ac/sanger/artemis/io/Entry \ +# uk/ac/sanger/artemis/io/ReadOnlyEntry \ +# uk/ac/sanger/artemis/io/QualifierInfoException \ +# uk/ac/sanger/artemis/io/QualifierInfo \ +# uk/ac/sanger/artemis/io/QualifierInfoVector \ +# uk/ac/sanger/artemis/io/QualifierInfoHash \ +# uk/ac/sanger/artemis/chado/DbSqlConfig \ +# uk/ac/sanger/artemis/circular/DNADraw \ +# uk/ac/sanger/artemis/circular/digest/Utils \ +# uk/ac/sanger/artemis/circular/digest/CircularGenomeController \ +# uk/ac/sanger/artemis/io/GffToEMBL -CLASSES := $(NAMES:%=%.class) -SOURCES := $(NAMES:%=%.java) +ARTEMIS_DIRS = uk/ac/sanger/artemis \ +uk/ac/sanger/artemis/chado \ +uk/ac/sanger/artemis/circular \ +uk/ac/sanger/artemis/circular/digest \ +uk/ac/sanger/artemis/components \ +uk/ac/sanger/artemis/components/alignment \ +uk/ac/sanger/artemis/components/database \ +uk/ac/sanger/artemis/components/filetree \ +uk/ac/sanger/artemis/components/genebuilder \ +uk/ac/sanger/artemis/components/genebuilder/cv \ +uk/ac/sanger/artemis/components/genebuilder/gff \ +uk/ac/sanger/artemis/components/genebuilder/ortholog \ +uk/ac/sanger/artemis/components/variant \ +uk/ac/sanger/artemis/editor \ +uk/ac/sanger/artemis/io \ +uk/ac/sanger/artemis/j2ssh \ +uk/ac/sanger/artemis/plot \ +uk/ac/sanger/artemis/sequence \ +uk/ac/sanger/artemis/util +#CLASSES := $(NAMES:%=%.class) +SOURCES := $(foreach DIR,$(ARTEMIS_DIRS),$(wildcard $(DIR)/*.java)) +CLASSES := $(SOURCES:%.java=%.class) all: idl code code: $(CLASSES) -- GitLab