From b708394df69f54e176a571bd8784831fc8522d86 Mon Sep 17 00:00:00 2001
From: tcarver <tjc>
Date: Thu, 5 Jul 2012 12:47:18 +0100
Subject: [PATCH] fixes for java 1.5
---
uk/ac/sanger/artemis/io/DocumentEntryFactory.java | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/io/DocumentEntryFactory.java b/uk/ac/sanger/artemis/io/DocumentEntryFactory.java
index 57acb4296..ad713b701 100644
--- a/uk/ac/sanger/artemis/io/DocumentEntryFactory.java
+++ b/uk/ac/sanger/artemis/io/DocumentEntryFactory.java
@@ -104,7 +104,8 @@ abstract public class DocumentEntryFactory
final ReadListener listener)
throws IOException, EntryInformationException
{
- if(document.getInputStream() instanceof net.sf.samtools.util.BlockCompressedInputStream)
+ if(!System.getProperty("java.version").startsWith("1.5.") &&
+ document.getInputStream() instanceof net.sf.samtools.util.BlockCompressedInputStream)
{
if(IndexedGFFDocumentEntry.isIndexed( ((File)document.getLocation()) ))
return new IndexedGFFDocumentEntry(document);
--
GitLab