From b774e77f86a23571fd39cfaa0afd448b9181896e Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Thu, 25 Aug 2005 15:02:57 +0000
Subject: [PATCH] tidy
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3589 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/j2ssh/SshLogin.java | 1 -
uk/ac/sanger/artemis/j2ssh/SshPSUClient.java | 3 +++
2 files changed, 3 insertions(+), 1 deletion(-)
diff --git a/uk/ac/sanger/artemis/j2ssh/SshLogin.java b/uk/ac/sanger/artemis/j2ssh/SshLogin.java
index daad75e5f..1d736a5b7 100644
--- a/uk/ac/sanger/artemis/j2ssh/SshLogin.java
+++ b/uk/ac/sanger/artemis/j2ssh/SshLogin.java
@@ -58,7 +58,6 @@ public class SshLogin
{
// defaults
private String logfile = null;
- private String wdir = "/nfs/pathscratch1/scratch";
// login variables
private String hostname = null;
diff --git a/uk/ac/sanger/artemis/j2ssh/SshPSUClient.java b/uk/ac/sanger/artemis/j2ssh/SshPSUClient.java
index c6ed411bf..4126d85c6 100644
--- a/uk/ac/sanger/artemis/j2ssh/SshPSUClient.java
+++ b/uk/ac/sanger/artemis/j2ssh/SshPSUClient.java
@@ -212,6 +212,9 @@ public class SshPSUClient extends Thread
db = "%uniprot";
}
+ if(settings.getProperty("wdir") != null)
+ wdir = settings.getProperty("wdir");
+
if(cmd != null)
{
if(cmd.equals("blastp") && settings.getProperty("blastp") != null)
--
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