From b92ee64792a8c99648e04d3789ddd0cf0b82223e Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Wed, 5 Mar 2008 10:20:01 +0000
Subject: [PATCH] fix for fasta34
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7199 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
uk/ac/sanger/artemis/editor/FastaTextPane.java | 5 +++++
1 file changed, 5 insertions(+)
diff --git a/uk/ac/sanger/artemis/editor/FastaTextPane.java b/uk/ac/sanger/artemis/editor/FastaTextPane.java
index 135f5b31f..b186cfdca 100644
--- a/uk/ac/sanger/artemis/editor/FastaTextPane.java
+++ b/uk/ac/sanger/artemis/editor/FastaTextPane.java
@@ -477,6 +477,11 @@ public class FastaTextPane extends JScrollPane
if(ind1 > -1)
{
ind2 = line.indexOf("ungapped)",ind1);
+
+ // fasta34 changed to similar
+ if(ind2 == -1)
+ ind2 = line.indexOf("similar)",ind1);
+
if(ind2 > -1)
hi.setUngapped(line.substring(ind1+1,ind2).trim());
}
--
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