From baec5c60030f5f25d54767c3952c3c49871bccab Mon Sep 17 00:00:00 2001
From: tjc <tjc@ee4ac58c-ac51-4696-9907-e4b3aa274f04>
Date: Wed, 22 Apr 2009 15:20:54 +0000
Subject: [PATCH] capitalise the evidence codes
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10590 ee4ac58c-ac51-4696-9907-e4b3aa274f04
---
.../components/genebuilder/cv/GoBox.java | 87 +++++++++++--------
1 file changed, 50 insertions(+), 37 deletions(-)
diff --git a/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox.java b/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox.java
index a98e30106..871a2b5a4 100644
--- a/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox.java
+++ b/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox.java
@@ -28,6 +28,8 @@ import java.awt.Color;
import java.awt.Cursor;
import java.awt.Dimension;
import java.awt.Font;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
import java.awt.event.MouseAdapter;
import java.awt.event.MouseEvent;
import java.awt.event.MouseMotionAdapter;
@@ -35,6 +37,7 @@ import java.util.Vector;
import javax.swing.Box;
import javax.swing.JLabel;
+import javax.swing.JOptionPane;
import javax.swing.JTextField;
import org.gmod.schema.cv.CvTerm;
@@ -56,42 +59,42 @@ public class GoBox extends AbstractCvBox
{"EXP", "IC", "IDA", "IEA", "IEP", "IGC", "IGI",
"IMP", "IPI", "ISA", "ISM", "ISO", "ISS",
"NAS", "ND", "RCA", "TAS", "NR" },
- {"EXP\t:: inferred from experiment",
- "IC \t:: inferred by curator",
- "IDA\t:: inferred from direct assay",
- "IEA\t:: inferred from electronic annotation",
- "IEP\t:: inferred from expression pattern",
- "IGC\t:: inferred from genomic context",
- "IGI\t:: inferred from genetic interaction",
- "IMP\t:: inferred from mutant phenotype",
- "IPI\t:: inferred from physical interaction",
- "ISA\t:: inferred from sequence alignment",
- "ISM\t:: inferred from sequence model",
- "ISO\t:: inferred from sequence orthology",
- "ISS\t:: inferred from sequence or structural similarity",
- "NAS\t:: non-traceable author statement",
- "ND \t:: no biological data available",
- "RCA\t:: inferred from reviewed computational analysis",
- "TAS\t:: traceable author statement",
- "NR \t:: not recorded"},
- { "inferred from experiment",
- "inferred by curator",
- "inferred from direct assay",
- "inferred from electronic annotation",
- "inferred from expression pattern",
- "inferred from genomic context",
- "inferred from genetic interaction",
- "inferred from mutant phenotype",
- "inferred from physical interaction",
- "inferred from sequence alignment",
- "inferred from sequence model",
- "inferred from sequence orthology",
- "inferred from sequence or structural similarity",
- "non-traceable author statement",
- "no biological data available",
- "inferred from reviewed computational analysis",
- "traceable author statement",
- "not recorded"}
+ {"EXP\t:: Inferred from Experiment",
+ "IC \t:: Inferred by Curator",
+ "IDA\t:: Inferred from Direct Assay",
+ "IEA\t:: Inferred from Electronic Annotation",
+ "IEP\t:: Inferred from Expression Pattern",
+ "IGC\t:: Inferred from Genomic Context",
+ "IGI\t:: Inferred from Genetic Interaction",
+ "IMP\t:: Inferred from Mutant Phenotype",
+ "IPI\t:: Inferred from Physical Interaction",
+ "ISA\t:: Inferred from Sequence Alignment",
+ "ISM\t:: Inferred from Sequence Model",
+ "ISO\t:: Inferred from Sequence Orthology",
+ "ISS\t:: Inferred from Sequence or Structural Similarity",
+ "NAS\t:: Non-traceable Author Statement",
+ "ND \t:: No biological Data available",
+ "RCA\t:: inferred from Reviewed Computational Analysis",
+ "TAS\t:: Traceable Author Statement",
+ "NR \t:: Not Recorded"},
+ { "Inferred from Experiment",
+ "Inferred by Curator",
+ "Inferred from Direct Assay",
+ "Inferred from Electronic Annotation",
+ "Inferred from Expression Pattern",
+ "Inferred from Genomic Context",
+ "Inferred from Genetic Interaction",
+ "Inferred from Mutant Phenotype",
+ "Inferred from Physical Interaction",
+ "Inferred from Sequence Alignment",
+ "Inferred from Sequence Model",
+ "Inferred from Sequence Orthology",
+ "Inferred from Sequence or Structural Similarity",
+ "Non-traceable Author Statement",
+ "No biological Data available",
+ "inferred from Reviewed Computational Analysis",
+ "Traceable Author Statement",
+ "Not Recorded"}
};
private Dimension go_dimension;
@@ -197,7 +200,17 @@ public class GoBox extends AbstractCvBox
evidenceList.setOpaque(false);
evidenceList.setToolTipText("evidence column");
evidenceList.setSelectedIndex( getEvidenceIndex(evidence) );
-
+ evidenceList.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ if(((String)evidenceList.getSelectedItem()).startsWith("NR \t::"))
+ JOptionPane.showMessageDialog(null,
+ "This evicence code is obsolete:\n"+
+ evidenceList.getSelectedItem(),
+ "Obsolete Evidence Code", JOptionPane.WARNING_MESSAGE);
+ }
+ });
evidenceListDimension = evidenceList.getPreferredSize();
evidenceListDimension = new Dimension(90,(int)evidenceListDimension.getHeight());
evidenceList.setPreferredSize(evidenceListDimension);
--
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